BtaINT0024424 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016913 | AVIL
Description
advillin [Source:HGNC Symbol;Acc:HGNC:14188]
Coordinates
chr5:55993091-55994378:+
Coord C1 exon
chr5:55993091-55993249
Coord A exon
chr5:55993250-55994198
Coord C2 exon
chr5:55994199-55994378
Length
949 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
3' ss Seq
GCTTTTTTCTTTCTCTCTAGGGT
3' ss Score
12.69
Exon sequences
Seq C1 exon
GGCTGCCACGCCTCACAGGATGAGCTGGCAGCCTCGGCATATCAGGCGGTAGAGGTGGACCAGCAGTTTGAAGGGGCCCCTGTGCAGGTTCGGGTTACCATGGGAAAGGAGCCGCGCCACTTCATGGCCATCTTCAAAGGAAAGCTGGTCATCTTTGAG
Seq A exon
GTGAGAAACCTAAGGTAAAACTACACCAGAAGCAGAATGCTCAGAACCAGCAGGTCAGCAGGGAGCTACAGTAGAGGAGAGGAGGGGTGGACAGTGGGGCTTGGGGAGGACACAGACGAGAAGGAGGTGGATCTCTCTAAGACACTGAAGTGCATCCCGACTGCCTAGGGCTTCAAGTCCTCACCCCTGCCTAGTTCATGTTCAAGGTCTTGTATAATCTGACCCATATTACCTGTGCAGGTGCATCACCCTCAGCTCCCTAACCTCCACACTCCACTCCAGTCAGGTGGGTCTCCTCTTTAGACCTCACATGTGCTCTATCATTCCCTGTCTGCCTCCCCCAGCCATGTGCCCCTTCAGACTCCAGTCCCATGTCTTCCAGAAAGCCTTGGCTGAAGCACCACCAGAACTGTATGATGTCACACGCTTGATATACACAAGTCTGTGGTCAAGTCCTAGTCTTGTCATTGATTACCCAGTTTTCTGAGCCTCAGTTTCCCCACCTGCACTGTGGGATAATAATACCTACTTCACAGAGTTATTATGAGGATCAATAAAATGATATAGCTAAGGCACCAGAAAAGAGCCTGGCATATAACCCAGGTCTCAGAATGAAAGCTAACACCATTTCTTAAAAATATTTATTTATTTGGCTGCAGAGGGTCTTAGCTATGGCATGTGGGATCTAGTTCTCTGACCAGGGATTGAAGCTGGGCCCCCTGCACTGAGAGCACAGAGTCTTAGCTGCTGGACCATCAGGGAAGTCCCCTGAAAGCTAACACTGTTGGTACCATAACTCCGGCTCATCTCGACCTCTCCCAGTTGGCTGAGAAGCTCCTTGAGGGCAAAGATGGTGTCAGATACAGCCCTATTCTCCACAGCGCTGGCCCAGTGCTCAGCGTACACTGTATACCTTAGATCTGGACTCTGCTTTTTTCTTTCTCTCTAG
Seq C2 exon
GGTGGGACTTCTAGGAAGGGAAATGCTGAGCCGGATCCTCCAGTAAGACTCTTCCAGATTCAAGGACATAACAAATCTAACACCAAAGCAGTGGAGGTCCCAGCCTTCACCTCCTCCCTAAACTCCAATGATGTCTTTCTGCTGAGGACGCAGGCAGAGCACTACCTGTGGTTTGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016913:ENSBTAT00000022497:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=NA C2=0.233
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PD(49.4=77.4)
A:
NA
C2:
PF0062617=Gelsolin=PU(48.6=56.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCACGCCTCACAGGATG
R:
CTTGCCAAACCACAGGTAGT
Band lengths:
335-1284
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]