MmuINT0022334 @ mm9
Intron Retention
Gene
ENSMUSG00000025432 | Avil
Description
advillin [Source:MGI Symbol;Acc:MGI:1333798]
Coordinates
chr10:126447957-126448934:+
Coord C1 exon
chr10:126447957-126448115
Coord A exon
chr10:126448116-126448754
Coord C2 exon
chr10:126448755-126448934
Length
639 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
GTCTGAACTCTGCTTTTCAGGGC
3' ss Score
8.09
Exon sequences
Seq C1 exon
GGCCGCCACGCATCCCGGGATGAGCTGGCAGCCTCAGCCTATCGGGCAGTGGAGGTGGATCAGCAGTTTGATGGAGCCCCTGTGCAGGTCCGGGTTAGCATGGGGAAGGAGCCACGCCACTTCATGGCCATCTTCAAAGGAAAGCTGGTTATCTACGAG
Seq A exon
GTGAGGACCTACAGACAACTTCATCTTGTGCAAGGATGCTCGGAGCTGAGGAGCTAATAAAGAGCTACCAGACAGGCTGGTGGCAGGATGAGGTGGCCTGTGTGGCGGGATGAACAAGGCTTAGCTTAGACGTTAGGGCAACGGAGGCGCTTGGTCTGCGACATCCAGGGAAATCTCAAGCCACTATCTAGTTAGTGCACTGTCTTTCCCATTCTGTGCCACATGATCTGCACAGCAGTAGCTATTACCAAGCCTGCACCCATCCAACACTGCTCTGCTCTCCTCAGTCACTGCCCTGGTGTGCCCCTCTCCTAGTCTAAGGCCTGCTTCTTCCACAGAGCCCTGATGGAAGCCTGGGCAGGCAATTCAGACACTCAGGTATAGGGGGGTCTCTCAAGTCTGATGTCAGGTCCTTCTCTTGCCCCGTGTAAGCCAATTTCCCAACCTCACTCTCCTCCTGTGCACAGTGGAATAATACCTGCTCCGCAGAATTACTCGAGGTCAGTTAGTGGAGGAAAATCGTGGTCCTCTCCCGTTAGCCTAGGGGGATCCTGAGGGACAAAGATGGTATACAGTCCATCTGACGTTCATAGCAGCCAGCTCACGCAGCACTCTGAAGGTCTGAACTCTGCTTTTCAG
Seq C2 exon
GGCGGGACTTCCAGGAAGGGAAACGAGGAGCCGGACCCTCCAGTAAGGCTCTTCCAGATCCACGGGAACGACAAATCCAACACCAAAGCAGTGGAGGTCTCGGCCTCTGCTTCCTCGCTCAACTCCAACGACGTCTTTCTGCTGCGGACTCAGGCAGAGCACTACCTGTGGTACGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025432-Avil:NM_009635:13
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=NA C2=0.367
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PD(49.4=77.4)
A:
NA
C2:
PF0062617=Gelsolin=PU(48.6=56.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCCGGGATGAGCTGGC
R:
CTTGCCGTACCACAGGTAGT
Band lengths:
328-967
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs: