RnoINT0024205 @ rn6
Intron Retention
Gene
ENSRNOG00000050419 | Avil
Description
advillin [Source:RGD Symbol;Acc:620301]
Coordinates
chr7:70301780-70302715:+
Coord C1 exon
chr7:70301780-70301938
Coord A exon
chr7:70301939-70302535
Coord C2 exon
chr7:70302536-70302715
Length
597 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
TCTGCTTTTCTCCTCTCCAGGGC
3' ss Score
12
Exon sequences
Seq C1 exon
GGACGCCACGCTTCCCAGGATGAGCTGGCAGCCTCGGCCTACCAGGCGGTGGAGGTGGATCAGCAGTTTGGTGGAGCCCCGGTGCAAGTCCGGGTTAGCATGGGGAAAGAGCCACGCCACTTCATGGCCATCTTCAAAGGGAAGCTGGTTATCTATGAG
Seq A exon
GTGAGGACTTACAAGTAAAACATCCTATACAGGGATGCTCAGAGCTAAGGAACCAATAAAGAGATACCAGACAGGCTGCGGTCCGGGTGAGGGGTGTGTGAACAAGGCTTAGTTTAGACATTAGGGTGAAGGAGGTGCTTTGTCTGAGACATCCAGGGAAATCTCAAGCCACTATCTACCTGGTGCCCATGGTCTTTCACATTCTGTGCCACATGACCTGCACCGCAGTGGCCTGTTACCCAGTCTAACACTGCTCTGCACCCTTAGTCACTGCCCAGGTGTGCCCCTCTCCTAGTCTAAGGCCTGCCTCTTCCACGGAGCCCTGGTGGAAGTCTCGGCAGGCAACGTAGACACTCACGTATGGGGGAGTCTCACAAGCCTGATGTCAAGTCTTTCTCTTGCCCTGTGTAAGACAATTTTCCAACCTCAGTTTCCTCGTGTGCACAGTGGAATAACACCTGTTCCTCAGAATTACTCTGAGGTCAGTGAGTGGTGGGAGACACTGGTCCTCACCCTGACCCTTCCCGTTAGCCTAGGGGATCCTGAGGGATAAAGAGGGTATGCAGTGCTCTGGAGGTCTGCTTTTCTCCTCTCCAG
Seq C2 exon
GGCGGGACTTCCAGGAAGGGAAATGTGGAGCCTGACCCTCCAGTAAGACTCTTCCAGATCCACGGGAACGACAAATCCAATACCAAAGCAGTGGAAGTCTCGGCCTCCGCTTCCTCCCTCAACTCTAATGATGTCTTTCTGCTTTGGACTCAGGCGGAGCACTACCTGTGGTATGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000050419:ENSRNOT00000073237:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.350
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PD(49.4=77.4)
A:
NA
C2:
PF0062617=Gelsolin=PU(48.6=56.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCCACGCTTCCCAGGAT
R:
CACAGGTAGTGCTCCGCCT
Band lengths:
326-923
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]