DreINT0036223 @ danRer10
Intron Retention
Gene
ENSDARG00000059342 | avil
Description
advillin [Source:ZFIN;Acc:ZDB-GENE-060421-6683]
Coordinates
chr11:211905-212475:-
Coord C1 exon
chr11:212317-212475
Coord A exon
chr11:212085-212316
Coord C2 exon
chr11:211905-212084
Length
232 bp
Sequences
Splice sites
5' ss Seq
GAGGTACAG
5' ss Score
6.62
3' ss Seq
TGTTGTGTTCCTCTGCTCAGGGT
3' ss Score
9.66
Exon sequences
Seq C1 exon
GGCCGGCATGCGTCTCAGGATGAAGTGACGGCGTGTGCGTATCATGCGGTGACGGTGGATCAGCAGTACGGAGGTCAGCCGGTGCAGGTGTCCGTCACCATGGGGAAGGAGCCACGACACTTCACCTCCATCTTCAAGGGCAAGATGGTGATCTATGAG
Seq A exon
GTACAGCCATACTGCAGGCGCTTCAGCTGGGTCTATCACAGCCATACTGCATCCGATTCAACCTAGACTATCACAGACAGACTGTAGATGCTTCAGCTGAGACTGCCACAGCTGTACTGCAGACACTTCAACTCAATCACAGCACATCTGGAATTTGCTCTTAATGGAGTCTTCCCGCACGTGTGTGGGTGTTTCCCTCAGGGTTACTCTGTTGTTGTGTTCCTCTGCTCAG
Seq C2 exon
GGTGGGACGTCCCGTAAGGGCCCAGTGGAGCCAGAGCCGCCCGTCCGGCTGTTCCAGATCTGCGGCTCGCACCCATCCAGCACTCGCGCCGTGGAGGTTCCAGCGCTGGCGGCGTCGCTCAACTCCAACGACGTGTTCCTGCTGAAGAGCCAGAGCGGAGTTTACCTGTGGTACGGGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059342:ENSDART00000104546:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.057 A=NA C2=0.150
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PD(49.4=77.4)
A:
NA
C2:
PF0062617=Gelsolin=PU(49.3=56.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATGCGTCTCAGGATGAAGT
R:
CTTCAGCAGGAACACGTCGTT
Band lengths:
301-533
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]