BtaINT0024427 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016913 | AVIL
Description
advillin [Source:HGNC Symbol;Acc:HGNC:14188]
Coordinates
chr5:55996269-55998043:+
Coord C1 exon
chr5:55996269-55996413
Coord A exon
chr5:55996414-55997854
Coord C2 exon
chr5:55997855-55998043
Length
1441 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
ACAGGTCTCTACAACAACAGGTG
3' ss Score
4.01
Exon sequences
Seq C1 exon
ACTACAGCAGGAGATCCTAGATGTCCAGTCTCGTCTCTTTGAATGTTCCAATAAGACTGGCCGGTTCACTGTCACTGAGATCATAGACTTTACCCAGGACGACCTGAACCCAGGTGACGTGATGCTCCTGGATACCTGGGACCAG
Seq A exon
GTAAGACACAGCCGGAGAGCTTGGAACAAATGACAGACATCCTCAAGCTTTAGGCTATTTTTTTGTATAGTATCTCTCCCCCAAACCCCAGGTAAGCCAGGGTAGCCCTGGACCATCCCCAAGTCAATCAAACAATTGTCAGTGGTGACCGAAGGAAGAGCCTGCTTTTTTGCCAGGGTTGGAGAGAGTAGAATGTTGTTTAAAACTCACCATCCTGGGAATTTTCCCACTATGCTCTGGGAAAATCATGCCATCCTATCACACACTCCATTCTCTCAGGACCAAGAGCAGTAGGCTGCACACCTGGAGATATGGGCCTTTGGGGGAATAAAGGGATAAAAGGGGACATCTTCAAGGCCACCCCTCTGCCACATCCGGTTTTCTTCAATTTGGCTCAGCAAACACCTCTTCCTTTCTAATCACTGTGCTGGGCGTGGTGTCGCTAAGGCAAAGGGCCCCACCCCACTCTCAGAGTCTACAGGCTGACGGAGGGTGGAGGAGACCAGATGGAGGATCATCATTTTACTGTGATGGAGGTACATATGAAGTGCCTCAGGAGCACAAATTAGGGTATTCAACACAGTTTGGGGGCTCAGAGAAGACTCTCTGGAGGAGATGTCTCCAAGACTCCAAGGAGAAACAGGTATTAATCAGGTAAAGAGGCCATTCCAGGCAAAAGAAAAGCAGGGCAGGAAATAGTCTAGTATATAGGGAACTACAAAGAGTATTATCAGAGTATAAGACAGAGTTAAAGAGTGCCCTAGAGGTGAAGCTAAAGAAGTAGGTATGGACCTTACCAACCAAGTCAAGAAGTTTGGAACTTACCCTGGAAAGCTACTGAAATTTAAGCAGGTGAGTGACATGGTCAGATTGTGCTTTAGATCACTCACTCTAGCGAGTGTAGGAGACGAGGGAGGGGGTGTGAGAAAAAAGAAGACTGTACGTTGGGAGGCCCGTCAGCACACATGGTCCTAGTCCAGAAAGAGCTGCTGCTGGCCCACAGAAGCAGTGGAGTAGAGCTGGATGGATGGCGACAGATTTGACAAAAGCATGAGAGGTAAACTAGCTAAGTCCTGGGGATACAGACTGCATTCAGAATGATTCCCAGGTTACTGCCTTGGGTGACTGAATGGACACCATTCCCCAAGAATGGAGACACAGATACAAGTTTAGAAAAGAGCTACATGTTGGGGGTGTTATACTTGAGGTGCTTGGAGACAGCCGAGAGGAGATGTTTTGCAAGAAGCTGGATTCAGGAAGCTGACGTTCAGAGAGTTCAGGACTGGAGATGTAGATGTGGGAGATACACAAATCAAAACAAATCTGAGAAAAACTTTACTCTGCTGAGGCTGTAAACTGCTGACGGGGAAAGACGGGGCAGCGCGTACTATCTAGCACTAGCCTCTGGCATGAGCGCAGTAACAGGTCTCTACAACAACAG
Seq C2 exon
GTGTTCCTGTGGATCGGGGCTGAGGCCAACGCTGCAGAGAAGAAGAGTGCTCTGTCTACCGCCCAGGAGTACCTGCACACTCACCCCAGCGGCCGAGACACCGGCACACCGATCCTGATCGTTAAACAGGGATTCGAGCCTCCCATCTTCACAGGCTGGTTCCTGGCCTGGGACCCTCACGTTTGGAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016913:ENSBTAT00000022497:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.143
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PU(34.2=55.1)
A:
NA
C2:
PF0062617=Gelsolin=PD(63.3=79.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTACAGCAGGAGATCCTAGATGT
R:
GCTCCAAACGTGAGGGTCC
Band lengths:
334-1775
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]