GgaINT1029664 @ galGal4
Intron Retention
Gene
ENSGALG00000011433 | VIL1
Description
villin-1 [Source:RefSeq peptide;Acc:NP_990773]
Coordinates
chr7:22033367-22033934:-
Coord C1 exon
chr7:22033790-22033934
Coord A exon
chr7:22033556-22033789
Coord C2 exon
chr7:22033367-22033555
Length
234 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGC
5' ss Score
6.46
3' ss Seq
ACACGGTGACCCCGTTGCAGATT
3' ss Score
5.67
Exon sequences
Seq C1 exon
GCTCCAGGAAGAGAATCCCTCTGTGCCCCCCCGGCTCTTTGAATGCTCTAACAAGACAGGCAGGTTCTTGGCCACTGAGATCGTCGACTTCACCCAGGATGACCTGGACGAGAACGATGTTTACCTGCTGGACACTTGGGACCAG
Seq A exon
GTGTGCTGGGCACATAAGGACTTGTCCTGCTGGGGACAAGTTCATGTCCCCAGGAGGATGAAGGACCTGCAGCAGCCAGAGGTGGTGGGATGGGAGCACGGAAACCTAAATCCACATGATTTTCATTGAGGATGGGCTCCCAGTACCCATCCTCGGGGACAGATTCTGTGTCCCCAGCCATGGGTGAGGTCCCAAAGGGCCATCCCCGTGCTGGACACGGTGACCCCGTTGCAG
Seq C2 exon
ATTTTCTTCTGGATCGGGAAAGGTGCCAATGAGTCAGAGAAGGAGGCGGCAGCAGAGACAGCACAGGAGTACCTGCGGAGTCACCCCGGCAGCCGTGACCTCGACACCCCCATCATCGTGGTGAAGCAGGGCTTTGAACCCCCCACCTTCACTGGCTGGTTCATGGCCTGGGATCCCCTCTGCTGGAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011433:ENSGALT00000038192:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.143 A=NA C2=0.286
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PU(34.2=55.1)
A:
NA
C2:
PF0062617=Gelsolin=PD(63.3=79.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAATCCCTCTGTGCCCCC
R:
CCATGAACCAGCCAGTGAAGG
Band lengths:
301-535
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]