RnoINT0162859 @ rn6
Intron Retention
Gene
ENSRNOG00000015408 | Vil1
Description
villin 1 [Source:RGD Symbol;Acc:1307048]
Coordinates
chr9:81706969-81707754:+
Coord C1 exon
chr9:81706969-81707113
Coord A exon
chr9:81707114-81707565
Coord C2 exon
chr9:81707566-81707754
Length
452 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
3' ss Seq
GACTGTGGGGCTCTCCACAGGTC
3' ss Score
9.07
Exon sequences
Seq C1 exon
GCTGCAGGAGGAAAACCAAGTCATCACTCCTCGGCTCTTTGAGTGCTCCAACCAGACTGGGCGCTTTCTGGCCACAGAGATCTTTGACTTCACTCAGGACGACCTGGAAGAGGATGATGTGTTCCTATTGGATGTCTGGGACCAG
Seq A exon
GTAGGAGAGGAGATCTGAGGACTGCCTTTCCCTCTACCTTGGTTCCTACCATAAGAGATCCCAGGAGCTTTAGGGTAGGGAAATGCCAAGGTCTTGCAGAGGGGCATTCTGGGTGGGGCATCCTTCTTCTTTATGAAGGAAGGAGGGAGAAATAGAGGGTCATCCCACGACTTATTTCCCATAGAAGCGGGAATGTTGCCAGGCATCTTGGGCTCTGTGGCAGAGAAATGTCACATATTCACAAGCCATCTATGGAGCAGCATGGGACCAGTCTCATATGCCAGATGTAAAGTCAAGGCCAAATCAGGCCTTGCTTAAGGTCATTAGCTGAGTAGTGTCGGGTCTTCCTAGCTAGGCATCAGGGATGAGTCAAGGCAGAGCCTGAAGGCATGGAGAATGGCCAAGCCGATGACCATGCAGGAAGGACTGAGGGACTGTGGGGCTCTCCACAG
Seq C2 exon
GTCTTCTTCTGGATAGGGAAACACGCCAACGAGGAAGAGAAGAAGGCTGCAGCTACAACTGCACAGGAATACCTCAAGACCCACCCCGGAAACAGAGACCCTGAGACCCCTATCATTGTGGTGAAGCAGGGGCACGAGCCCTCCACCTTCACAGGCTGGTTCCTGGCTTGGGATCCCTTCAAGTGGAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015408:ENSRNOT00000021432:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.041 A=NA C2=0.365
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PU(33.3=53.1)
A:
NA
C2:
PF0062617=Gelsolin=PD(64.1=79.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGCAGGAGGAAAACCAAGT
R:
ACTCCACTTGAAGGGATCCCA
Band lengths:
334-786
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]