DreINT0036226 @ danRer10
Intron Retention
Gene
ENSDARG00000059342 | avil
Description
advillin [Source:ZFIN;Acc:ZDB-GENE-060421-6683]
Coordinates
chr11:209411-211379:-
Coord C1 exon
chr11:211235-211379
Coord A exon
chr11:209600-211234
Coord C2 exon
chr11:209411-209599
Length
1635 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGAG
5' ss Score
7.1
3' ss Seq
CACGGCTCTCTCTCCTGCAGATA
3' ss Score
12.73
Exon sequences
Seq C1 exon
TTTGCAGCAGGTGACTCTGGAGCACCAGCCGCGTCTCTTCGAGTGCTCCAATAAGACGGGACGCTTCACAGCCACTGAGGTCACGCAGTTCACACAGGACGACCTGCGGGAGGACGACGTCATGCTGCTGGACACCTGGGACCAG
Seq A exon
GTAGAGCTCAACCAGCCATGAGTACTTTTTATAGTACTGTAAACTAAAATCACAAACAACTGAGAAAGGGATTGGAAATAGGGCAAAAATTAGTCACATCCAAAATAAAAAATAGTTTTGACATAATATATGTGTGTGTATTAAACAGATGAAATCAAAATCATTTACATTCATATATATATATAATTTTTTTTCAAATATTTCCCAGATGATGTTTCTCAGATTCAGCAGTTGTTCACAGTATTTCCTCTAATATTTGTAGTTCTGGAGAAAGTCTAATTTGTTTTATTTGGGCTAGAATAAAATCAGTTTTTATTTGTTTTAAGCCCATGTTAAGCTCAATATTATTGGCTCTTTCAGCAATATTAGTGTTGGATTGTCTCCAGAACAAACCACTGTTATACAATGACTTGCCTAATGACTAGTCCCACACTGAATCTGCGCGTGCAGAATCCTTTTTACCTCATCAATGATTCTGTTTATTTACTCAAGTAAATGTGTAAAAATTAATATAAAAAATAAATTTATTCAGTTTTTAAATTAATTTCAATATAATTATTGACTAATATGAAAATGTTCATATAATTCATTTACAATAAAGTTTGTACAGTGAAATGTTCTGTCTTTTAGTAGAGATACTATATGACAGACTTGTTTACCAAATAGAGTGGATCTAATTGGACTTGCGTTGTAAACATTAAATACAAGTTAAAGAGGTATTACTTTTTAGTTCATAAATTAAAGTTTAGGTTATGATACTCCCAAAACTCGAGGCAGTGGCGCAGTAGGTAGTGCTGTCGCCTCACAGCAAGAAGGTCGCTGGTTCGAACCTCGGCTCAGTTGGTGTTTCTGTGTGGAGTTTGCATGTTCTCCCTGCCTTTGAGTGGGTTTCCTCCGGGTGCTCCGGTTTCCCCCACAGTCCAAACACATGCGGTACAGGTGAATTGGGTAGGCTAAATTGTCCATAGTGTATGAGTGTGTGTGTGAATGTGTGTGTGTGGGTGTTTCCCAGAGATGGGTTGTGGCTGAAAGGGCATCCGCTGCGTAATAACTTGCTGGATAAGTTGGCAGTTCATTCCGCTGTGGCGACCCCGGATTAATAAAGGGACTAAGCCGACAAGAAAATGAATGAATGAATGAATGAATGAATGAATGACTCCCAAAACTTTCAAAAAATAACAAAAAAAGTCTGCAGATTCCCTCTGACCCTAATTACCCTAACTTTACCCTAATTACCCTAGTGAAGCCTTTAAACGTCACTTTAAGCTGAACACTAGTGTCTGGAAGAATATCTAGTCTAATATTAGTTACTGTCATCATGACCAAGAGGAAACACATCAGTTATCAGAGATGAGTTATTAACACTATCATGATTAGAGATGTGCTGAATCTCTCTGTTAAACAGAAATTGGGGAAGAAACATACTTAGAATGATTCTGACTTCAACTCTATATATATATATATATATATATATATATATTAAATATATGCAACACACACACTTGAAATATGTCAAAACACACCTTTATTTGGGATGCCATCAATGTTGATGGTGTTTTTGGCCAGCACTAGTGGAAACATGGTTGTGTTGATGTGAAGCTGACCTTCGTGCTGTCACGGCTCTCTCTCCTGCAG
Seq C2 exon
ATATTCCTCTGGATGGGGAATGAGGCCAATGATGTGGAGCGGCGCGAGTGTGTGCCTACCTGTGCCGAGTACCTGCGGACACACCCCGGCTCCAGAGACCCCGACACCCCCATTGTCATCATCAAGCAGGGCTTCGAGCCACCCACATTCACCGGCTGGTTCACTGCCTGGGACCCTAGCAAGTGGAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059342:ENSDART00000104546:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.122 A=NA C2=0.175
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PU(34.2=55.1)
A:
NA
C2:
PF0062617=Gelsolin=PD(63.3=79.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGCAGCAGGTGACTCTGGA
R:
ACTCCACTTGCTAGGGTCCC
Band lengths:
334-1969
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]