RnoINT0024208 @ rn6
Intron Retention
Gene
ENSRNOG00000050419 | Avil
Description
advillin [Source:RGD Symbol;Acc:620301]
Coordinates
chr7:70304567-70306037:+
Coord C1 exon
chr7:70304567-70304711
Coord A exon
chr7:70304712-70305848
Coord C2 exon
chr7:70305849-70306037
Length
1137 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
TATGACATCTGTACTCCTAGGTG
3' ss Score
7.42
Exon sequences
Seq C1 exon
GCTGCAGCAGGAAACCCTGGACATCCAGGTCCGGCTTTTTGAATGTTCTAATAAGACCGGCCGGTTCCTTGTTACTGAGGTCACGGACTTCACCCAGGATGACCTGAGCCCAGGTGATGTGATGCTCCTGGACACCTGGGACCAG
Seq A exon
GTAAGACACAGCCACAAAGTGCAGGATGCTGGAAAAGGTCTCTACATTTGGGCTTGTTTCTCTGTGGCATCCCCACCCAGGATGAAGAGGCAAGTGCTAGACCAACTGAGTCACACTGAGTCGGTGGTTGCTAGAGAGCTTGCTTTATGCCACAGTCAGCAGAGACTGATGTCTCACCTCACCAACCTGAGCCAGGAAACTGACATATGCATGGAGTCCAAGCAGCCAGCAGACAGGCGGGAGGATCCAAACAAAATTTGAGGCCAGCCAGGGCCCCTGTCTCAAAAAAGCTAAAAAAAAAAGGGCGGGGTAGGGGGGTGGGCAGCAAGCCGGCCCAGTGAGTAAAGGTGTTTGCCACCAACACTGTCAACCTGAGTCTGATCCCCAAGACCCACCCAATGTGAGGCAAGAATGGATCCTGCAAGTTGCCCTCTGACCTCCACGCCTACACTCTGGCACAGGTGTTCCCACACCCACCAAATAGAGAGGATAGAAAAATTCGAGCCAAACCAAACAAAAATTTCCTCTCAGCACCCTGGGAATTTTCTCACCTTATTTTGGAAAACAAAGCATAGCATAGTTCCTGCCCTTATGTGAGCATGACAGCAGATTCTAGAGACTATGGCCTTTTAGGCAGCAGGTGAACGAGATGTCTTCCCGAGTATGCCATTTCCCTCCATGCTAATGAGCCTTCAGTGTTTACAGGCTGGAGGGAGAAGCCAGGCAAAGCAACCTCCGGGCTTTATGGTGAGGTGTGTGAAGCACTTAGTGCAGTTCCGAGCTCTCAGAAGACTCCTAGAGAAGGACAAGTGGGAAGAGGGTGAGACACGGAATCCTATCAGAGAATAAAATAAGTCTGGCAGAGTAGCTCACGCCTGCAGTCCTAGCACTAGGGAGGCTGAGGTAGGAGAATTTCTGTGAATTCAAGAAAAGAGTAGGCTTGAGGCCAGCCTGGGCTAGACAGTGAGGTCCTATCTCAAAATCAAACAAATAAACACACAAAGATGTAAGACAAGAGCTAAGATACACCTGAGAGATGCAGCTGAGAAGTACTTGTGGACTCTGAGGGCCTGATCCATCATACCACAAAGCGGCATGGGCCCAAAAGCACTAACAATATGACATCTGTACTCCTAG
Seq C2 exon
GTGTTCCTGTGGATAGGAGCGGAGGCCAATGCCACAGAGAAGGAGGGGGCCCTCTCGACTGCTCAGGAGTACCTGGTAACACACCCCAGTGGCCGAGACCCCGACACACCGATCCTGATCATCAAACAGGGCTTTGAGCCCCCCACTTTCACAGGCTGGTTCCTGGCATGGGACCCTCACATTTGGAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000050419:ENSRNOT00000073237:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.222
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PU(34.2=55.1)
A:
NA
C2:
PF0062617=Gelsolin=PD(63.3=79.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGCAGCAGGAAACCCT
R:
ACTCCAAATGTGAGGGTCCCA
Band lengths:
334-1471
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]