BtaINT0024531 @ bosTau6
Intron Retention
Gene
ENSBTAG00000026236 | AZGP1
Description
Bos taurus alpha-2-glycoprotein 1, zinc-binding (AZGP1), mRNA. [Source:RefSeq mRNA;Acc:NM_001034331]
Coordinates
chr25:36983272-36984530:-
Coord C1 exon
chr25:36984270-36984530
Coord A exon
chr25:36983548-36984269
Coord C2 exon
chr25:36983272-36983547
Length
722 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
GGGCCGGGGGGAGGGTGCAGGGT
3' ss Score
-9.87
Exon sequences
Seq C1 exon
GGAATTACTCTCTAAGCTTCCTCTACACCGGGCTGTCCAAGCCCCGTGAGGGCTTCCCCAGCTTCCAGGCCGTTGCCTACCTCAATGACCAGCCCTTCTTCCACTACAATAGTGAAGGCAGGAGGGCCGAGCCCCTGGCGCCATGGAGTCAGGTGGAAGGAATGGAGGACTGGGAGAAGGAGAGTGCCCTTCAGAGGGCCAGAGAGGACATCTTCATGGAGACCCTGAGCGATATCATGGACTACTACAAGGACAGAGAAG
Seq A exon
GTGAGTGGACCACAGGCTGCGGGGGTGCAGGGGCTCCACTCAAGAGGCAGCCCCGCAACTGTGAGCGGGATGGAAGCAGGCCCTCCCAAAGGAGGATCGGGAAGCACGAGCGGAAACACACAGACTTTTCTGCGTGCCTCTCCCGCATCCCACACTCACCTGCCTGCCTGCTTTCCCCGTCCTCACTCCCAGGGCCGAGTCAGGACGAATCCGGGCACTTCTGAGCTCTCCCTTCCACACCCCCATCCATCCAAGGCGGGTCCCTCTTTGTGTGCCAGACTCACCCCTGCCCAGGGATGTGGGGTGGAGAGTGAGGCAGCCTGCAGTGCGTCCTGGGTTCACGTGGTGGCTCCCCCAGTCACGAGCTACTCGACCATGGACACACTGCTCGGTTGTCTAGTCTTGTTGTTGTTTAGACTCTAAGTCCCACCTGACTCTTTGTGACCCCGTGGACCGTAGCCCACCAGGCTCCTCTGTCCATGGGATTTCCCAGGAAAGAATACTGGAGTGGGGTTGCCCTTTCTTCTCCAGGGGATCTTCCCGGCCCAGGGATCGAACCTGTGTCTCCTGCATTGGCAGGCGAGTTCTTTACTGCTGTGCTACCAGGGAAGCCCCTGCTATCTAGGCTATTGGTGGCAGACTGTGCAAGAGGAAGAGCTCTTTAGGCATAACTGATGCCCAGCTGGCTGGCTGACTTTCACGGGGCCGGGGGGAGGGTGCAG
Seq C2 exon
GGTCTCACACCTTTCAAGGAGCATTCGGCTGTGAGCTCCGGAATAACGAAAGTAGTGGAGCATTCTGGGGGTACGCCTACGATGGCCAGGACTTCATCAAGTTCGACAAAGAAATCCCAGCCTGGGTCCCTCTGGACCCAGCAGCTCAGAACACCAAGCGGAAGTGGGAAGCAGAGGCAGTCTACGTGCAGCGGGCCAAGGCCTACCTGGAAGAGGAGTGCCCAGGGATGCTGCGGAGGTACCTGCCCTACAGCAGGACCCACCTGGACCGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000026236:ENSBTAT00000037204:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.023 A=NA C2=0.022
Domain overlap (PFAM):
C1:
PF0012913=MHC_I=PU(49.4=98.9)
A:
NA
C2:
PF0012913=MHC_I=PD(50.0=94.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGTTGCCTACCTCAATGACC
R:
CACTTCCGCTTGGTGTTCTGA
Band lengths:
358-1080
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]