MmuINT0022427 @ mm9
Intron Retention
Gene
ENSMUSG00000037053 | Azgp1
Description
alpha-2-glycoprotein 1, zinc [Source:MGI Symbol;Acc:MGI:103163]
Coordinates
chr5:138426354-138428942:+
Coord C1 exon
chr5:138426354-138426614
Coord A exon
chr5:138426615-138428666
Coord C2 exon
chr5:138428667-138428942
Length
2052 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
3' ss Seq
TGGGATCCGGGAGGCTTCAGGGT
3' ss Score
-4.49
Exon sequences
Seq C1 exon
GGTCTTATTATCTGACCTTTCTCTACACCGGGTTGTCCAGACCCAGCAAAGGTTTTCCGAGGTTTCAAGCCACTGCATTTCTCAATGACCAGGCCTTCTTCCACTACAACAGCAACAGCGGGAAGGCAGAGCCTGTGGGACCTTGGAGCCAGGTGGAAGGAATGGAGGACTGGGAGAAGGAAAGCCAGCTTCAGAGGGCCAGGGAGGAGATCTTCCTTGTGACCCTGAAAGACATCATGGACTATTACAAGGACACTACAG
Seq A exon
GTCAGTGATCTCCTATCGCCCAATGAGTGTGTGTGCCTTACCCGATGCAATCCACGAGTATGAGTGGAAAGGATTGCACACACACACACACACACACACACACACACACACACACACGTACACAATCACATCTACCTCCTCCTTTCCCATGGCTTCCTCCACCCTCACCCCAGACATCAACTCCTACAGCAGTGATTCTTGACCTATGGGCTGTAACCCCTTTGAGGGTTGCTTATCAGACATCCTGAGTATCAGATATTTACATAACAAGTCATAATAGTAGCAAATTTACAGTTATGACAAAGTGGCAATAAAATAATTTTGTGGTTGGGGGTTACAATACTATGAGGAACTGTATTAAAGGGTTGCACTTATTAAGAAGGTTAAGAGCCACTACAGGGAAATGGTATCAGAGTCCCTTTCCTACCCAGGCACCACTCACTGACCATTCATCTCCATGCCCTGACCCACTTGAAAAGGAATCAGATTCAACACTTCCCAGGTGGAGATCAATAGAGAAGCACTCCCAGCATGCTCCTCTCTCCCAGCATGCTCCTCTCTCCCAGCATGCTCCTCTGGACTCTTGAGTGTGCATGCATGGGTACACATGTGTGCATACACAACCATGTGCTTACACTATGCACATGCACACCACAATTAATTAATAATAATAAAATCAACAGTAACTTGTGATTACTGAGCAATTACTCTGTGCCAGGCTCAGGTGTGAGCACATTTAATAGTCAAAATAACATCTTCAAAGATTATTACTCTTCTCATTTCAGGGATTTTCTTAAAGTATTTCACTTAAACTTAACTATATTTCATAGTTCATTTAACAATACAGGTGTGTGGGCTGGGCAGTGGTGGCGCACGCCTTTGATCCCAGCACTTGGGAGGCAGAGGCAAGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTGGAAAAACCAAAACAAACAAACAAACAAACAAACAAAAAGCAATACAAGTGTGTGAACCAGGGAGAGATCTGGAATTTAAATCCAGACAGCTTAAGAGATTTTAGAGCCAGTGCCACCAACATCACTCAGGACGGAGTAAACATCCAATGTTGTAATCAGACTGACCTGTGGTAGGTTGGTTACTTTGTGCAAGTGTCATTGTTCTTGGGTAAGGGGGTGAAGGTCTTTAAAGATTGGGAGTAAACACCAAACAGGTTTGGAGGATTGTGGCTTATCAGTAATTCCAGCATCCAGAAAACTTAGAGAAGATTGCTGTAAGTTTGTGGTAACTGGGCTACATACTGAGATCCAGGCCAGCCTGGGCTATAAAGTATGATCCTGTCTCAAACATAAACAAATAAATAAATAAATAAATAATACTAACCACTGAAAGGAGAGAAATGACCCAGTTATGTATAGAGCAATGATTTGAATGCAATATAGACCTGACAAATAGGAATTCTGATAATCTATAAGAAACCACAAATAACTCCTATTTAACTTAGAAATAGAATCCAGTGTGTGTTTAATTCTGAAGAATTCACCATCCACTAAAACACATAAGTTCACTAGATAAGATGATGTAAAAAATACTTCAAATCTGAGTGCTTACCTACATGGCAAGAGGTCCTGGGTTCAGTTCCCAGCACTGCATAAAACTGGGTACTGTGTCACATACCCATAATCCTAGCACTAGAGAGATGAAGAGGGTCAGAAGTTCGAAGTCATCATTCGTACCTAGGATCTGAGGCTATTGCATGAGACCCTGTTAGACAGAAAAAGACTTGGAATCTATCCACAACTTATGAAATTCTCCAACTATGAAGAATGTGTTCCCTCTCAGAGTGGCCTGAAACGCCCAGCCAAGTAGTTTCCTCCTCTGCTGTGTGCCTGGCTAGCAACTTGTTTGCCAAGATAAAGAATTGAGTGTTTAGATGCCCCAAGCATAAAGGAATTGAAAGTTGCTCAGCTGGAGTTGGCATCCATCTGACTGACTTTCCTGTGGGATCCGGGAGGCTTCAG
Seq C2 exon
GGTCTCACACCTTTCAGGGAATGTTTGGTTGCGAGATCACAAATAACAGAAGTAGTGGAGCTGTCTGGAGGTATGCCTACGACGGAGAGGATTTCATCGAATTCAACAAAGAAATCCCAGCTTGGATCCCCTTAGACCCAGCAGCTGCAAACACCAAGCTAAAGTGGGAAGCAGAAAAGGTCTACGTGCAGCGAGCCAAGGCATACCTAGAGGAGGAGTGTCCTGAAATGCTGAAGAGGTACCTGAACTACAGTCGATCTCACCTGGACCGAATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000037053-Azgp1:NM_013478:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.023 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0012913=MHC_I=PU(49.4=98.9)
A:
NA
C2:
PF0012913=MHC_I=PD(50.0=94.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: