BtaINT0024975 @ bosTau6
Intron Retention
Gene
ENSBTAG00000005676 | BAT8
Description
Bos taurus euchromatic histone-lysine N-methyltransferase 2 (EHMT2), mRNA. [Source:RefSeq mRNA;Acc:NM_001206263]
Coordinates
chr23:27283927-27284422:+
Coord C1 exon
chr23:27283927-27284162
Coord A exon
chr23:27284163-27284239
Coord C2 exon
chr23:27284240-27284422
Length
77 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTG
5' ss Score
9.04
3' ss Seq
ATTCACGCCTTCTCCCACAGTGC
3' ss Score
8.34
Exon sequences
Seq C1 exon
GGCACCTTCCTGGAGTGTCACCCCGACTTCCGTGTGGCCCACCGCTTCCACAAGGCCTGTGTGTCCCAGCTGAACGGGATGGTCTTCTGTCCCCACTGTGGGGAGGACGCATCTGAGGCCCAGGAGGTGACCATCCCCCGGGGGGATGGGGTGACCCCACCGGCTGGCACTGCAGCACCCGCTCCCCCACCCCTGGCCCAGGATGCCCCCGGGAGAGCGGACACTTCCCAGCCCAG
Seq A exon
GTACTGGCTTTGCCCTTGCCTTCTGTCTTCCCTGCGCAGTCCCCATCTGCCCTAGACATTCACGCCTTCTCCCACAG
Seq C2 exon
TGCCCGGATGCGGGGGCAGGGGGAGCCTCGGCGTCCACCCTGCGACCCTCTGGCCGACACCATCGACAGCTCAGGGCCCTCCCTAACCCTGCCCAATGGGGGCTGCCTCTCAGCTGTAGGGCTGCCACCAGGGCCAGGCCGGGAGGCCCTGGAGAAGGCCCTGGTCATCCAGGAGTCAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005676:ENSBTAT00000007456:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.494 A=NA C2=0.839
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGAGCGGACACTTCCCAG
R:
CCTTCTCCAGGGCCTCCC
Band lengths:
183-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]