MmuINT0055995 @ mm9
Intron Retention
Gene
ENSMUSG00000013787 | Ehmt2
Description
euchromatic histone lysine N-methyltransferase 2 [Source:MGI Symbol;Acc:MGI:2148922]
Coordinates
chr17:35043322-35043822:+
Coord C1 exon
chr17:35043322-35043557
Coord A exon
chr17:35043558-35043639
Coord C2 exon
chr17:35043640-35043822
Length
82 bp
Sequences
Splice sites
5' ss Seq
TAGGTATTG
5' ss Score
5.64
3' ss Seq
CTCAAAACCTTTTTCCACAGCGC
3' ss Score
7.07
Exon sequences
Seq C1 exon
GGCACCTTCCTGGAATGCCACCCCGACTTTCGTGTAGCTCACCGCTTCCATAAGGCCTGCGTATCCCAGCTCAATGGGATGGTCTTCTGTCCCCACTGTGGAGAGGATGCCTCAGAGGCCCAGGAGGTGACCATTCCTCGGGGCGATGGGGGAACACCCCCAATTGGCACCGCAGCTCCTGCTCTGCCACCCCTGGCACATGATGCCCCAGGGCGAGCGGATACCTCCCAGCCTAG
Seq A exon
GTATTGGCCTCTCCACCACCACCACCACCCGGTTATCCATCTTATCTCCCTTGCCCCCAGACCTCAAAACCTTTTTCCACAG
Seq C2 exon
CGCCCGAATGCGAGGGCATGGAGAGCCGCGGCGCCCGCCCTGTGATCCCCTGGCTGACACCATCGACAGCTCAGGGCCTTCACTGACTCTGCCTAATGGGGGCTGCCTCTCCGCTGTGGGTCTGCCCCCAGGGCCGGGCAGGGAAGCCCTGGAAAAAGCCTTGGTCATCCAGGAGTCTGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000013787-Ehmt2:NM_147151:12
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.494 A=NA C2=0.835
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGGATACCTCCCAGCCTAG
R:
AAGGCTTTTTCCAGGGCTTCC
Band lengths:
182-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: