DreINT0061799 @ danRer10
Intron Retention
Gene
ENSDARG00000026634 | ehmt1b
Description
euchromatic histone-lysine N-methyltransferase 1b [Source:ZFIN;Acc:ZDB-GENE-080515-3]
Coordinates
chr21:14563432-14563986:-
Coord C1 exon
chr21:14563760-14563986
Coord A exon
chr21:14563633-14563759
Coord C2 exon
chr21:14563432-14563632
Length
127 bp
Sequences
Splice sites
5' ss Seq
AGGGTATGT
5' ss Score
8.34
3' ss Seq
GATCTGTTGATCATTTAAAGGTC
3' ss Score
6.52
Exon sequences
Seq C1 exon
GGTACCTTCATGGAGTGTCAGCCAGAGGTGAACATCTCCCACCGCTTCCATCGGACCTGTGCCTCGGTACTTAATGGGCAGAGCTTTTGTCCACATTGTGGAGAGGAAGTCAGCAAGGCGAAAGAGGTCACCATTGCCAAGGCAGATACAACGTCAACTGTACCCATCACCCATAGCTCCTGCATACCCAGCACCTCAGAGGGCAAAGCGGACACTACCACTGGAGG
Seq A exon
GTATGTGCCAGCTGAATAATGTTATGTAGCCTTTTACAACATCTTCCTGCAACTGCATTCCTGTAGGATGTAGTTCATTTTGTTTTTTCACATCTTATCTTTAAGTTGATCTGTTGATCATTTAAAG
Seq C2 exon
GTCCACTCGGCTCTCTGTACTTGGAGAGGGAAAAGCAAACAGCACCTTACCCAAACCTTCAGAATCACAGGACACATCTTTGTCCCTTGTGGGTTCCAAAGCCAGGTCTGTAGCGATGGCAGCTGCACCTGGACTTCCACTTCCACCAGGACCACCTAAAGAAACTCTGCAAAGTGTCCTGCTGGCTCTAGATGCTGAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000026634:ENSDART00000124223:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.316 A=NA C2=0.809
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF127962=Ank_2=PU(13.1=16.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAAGGCAGATACAACGTCA
R:
TAGGTGGTCCTGGTGGAAGTG
Band lengths:
250-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]