MmuINT0055969 @ mm10
Intron Retention
Gene
ENSMUSG00000036893 | Ehmt1
Description
euchromatic histone methyltransferase 1 [Source:MGI Symbol;Acc:MGI:1924933]
Coordinates
chr2:24838701-24839756:-
Coord C1 exon
chr2:24839530-24839756
Coord A exon
chr2:24838869-24839529
Coord C2 exon
chr2:24838701-24838868
Length
661 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTA
5' ss Score
7.64
3' ss Seq
AATATTTCCTTCTCATGAAGCAT
3' ss Score
4.14
Exon sequences
Seq C1 exon
GGTAACTTCATGGAATGCCAGCCTGAGAGCAGCATCTCTCATCGTTTCCATAAGGACTGTGCCTCTCGAGTCAACAATGCCAGCTACTGTCCCCATTGTGGGGAAGAAGCTTCCAAGGCCAAAGAGGTGACCATAGCAAAAGCAGACACAACTTCCACAGTGACCCTAGCCCCTGGACAGGAGAAGAGCCTGGCTGCTGAAGGCAGGGCTGACACGACCACGGGCAG
Seq A exon
GTACTAAGCAAAGTAGCTGTGGCCAAGCTTTCCACATAACATCACTAAAGAGACAACCGGTTTCTGTTGCCTTTGCCAAAAGTCTCAGTGAACTTTGCCATTTATCATGGTTTCTGATCTCCAGTGGCGCACACCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGAGGCAGAGGCAGGCGGATTTCTGAGTTGAGGCCAGCCTGGTCTACAGAGTGAGTTCTAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTTGGAAACCAAAGGAAAAAAAAAGTATGTAAATATAGCTAAACAATGGGTTAGGAAGGTCTTAGTACTTTCCTATTGATTGTTAAATCCAGTATTCTCAGGCAGTAGATTCGCTAGGTATAGCCTGAAGCGTCTTTATTAAAATAAGGTTTGAGTAAGCGGATGTACTCCTGGCAATGTTGTGCTGACTTCTGAGTGTCTCGTGTCACAGGGGAAGGGGTTCTGCAGTTCAGGCAGCTCTCTTGCGATTTGCAGGTCTGAATAGACTGCTTGTTGAGTCTACTCAGAGGCAGCCTGTGTGGTCTGGCTGGAGTAGGTCTTATTTTATATATTCATTGGTTTCTGTGAGAAAGAGAGGTTTTCCAAATAATGAAACTCAACATCTTAATATTTCCTTCTCATGAAG
Seq C2 exon
CATTGCTGGAGCCCCAGAGGATGAAAGATCGCAGAGCACAGCCCCCCAGGCACCAGAGTGCTTCGACCCTGCCGGACCGGCTGGGCTCGTGAGGCCGACATCTGGCCTTTCCCAGGGCCCAGGAAAGGAAACCTTGGAAAGTGCTCTAATCGCTCTAGACTCTGAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036893:ENSMUST00000147147:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.458 A=NA C2=0.917
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF127962=Ank_2=PU(15.3=22.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCCTGAGAGCAGCATCTCT
R:
CAAGGTTTCCTTTCCTGGGCC
Band lengths:
345-1006
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types