RnoINT0053544 @ rn6
Intron Retention
Gene
ENSRNOG00000007242 | Ehmt1
Description
euchromatic histone lysine methyltransferase 1 [Source:RGD Symbol;Acc:1307588]
Coordinates
chr3:2010656-2012269:-
Coord C1 exon
chr3:2012043-2012269
Coord A exon
chr3:2010824-2012042
Coord C2 exon
chr3:2010656-2010823
Length
1219 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTA
5' ss Score
7.64
3' ss Seq
ATAATTTTTTTCTCATGAAGCAT
3' ss Score
4.95
Exon sequences
Seq C1 exon
GGTAACTTCATGGAATGTCAGCCTGAGAGCAGCATCTCTCATCGTTTCCATAAGGACTGTGCCTCTCGAGTCAACAATGCCAGCTACTGTCCCCATTGTGGGGAAGAGACTTCCAAGGCCAAAGAGGTGACCATAGCAAAAGCAGACACGACTTCCACAGTGACCCTGGCCCCTGGACAGGAGAAGAGCTTGGCTGCTGAGGGCAGGGCTGACACGACCACTGGCAG
Seq A exon
GTACTAAACAACGTAGCTGTGACCAAGCCTTCCACATAATATCCCCAAGGATATGTCCTCTGTAGTTCCCGGTTTCAGTTGCTTCGCCAGAAGCCTCAGTGAACCTCGTCATGTATCATGGGTTCTGATCTCTGAGACGTATTGGTGTTCATTTAATACCGTCTTCACATGGGTCTCTTTTATTCTGGCATGATGAAATCATCTATGTTGAATCAGTTTTATGTTCCTTGACATGATACAGCTTTTTGTGCTTTTGTCGCTTACATGTGTAGTCTCCACACCCTGTGGAGCTGTGGGACTTGCTGCACTGTTTGCTACAGGGTTAAAGACAAGAATTATTTATATATATAAATAATTAATTTGCTTTTCTAAAAAGGACCAGTAGAAAGAGCTTTTGAGCTGGGGAGATAAATAGATGACTGCAGTCTCTCCTGCCAGGCAGGCCCTGATAGGAAAGGAATGGTGAAGAGATTCTTTCCAGATGGCGACAGAACTATCAAGTTTCTTAGCAAAAGAGGAAGGAAGTTTTATAACCACGACAGCAGTAGAAAAAATAACCGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGGAAGCGCAAGGCCCTGGGTTCGGTCCCCAGCTCCGAAAAAAAGAACCAAAAAAAAAAAAAGAAAAAAAGAAAAAAATAACCTAAAACTTCATTTTGGGGTCATTTAGAAGACTCTGATTGCATGTATATACAGCCGATTGTATGTATATACAGCTGATTGCATGTATATACAGCCAATTGTATGTATATACAGCCAGACCAAGGGGTCAGAAGGCCTTACTGCTCTCCTGTTATTGGTGACACTCAGTATTCTCAAGTCATAGTCTTCAATTGTGGAAAGCAGTAGATTTGCTAGTTAAAGCTGAATCTTGTTTATTAAAGTAAGGTTTGAGTGGGTGAGTGGTACTCCTAGTAATGTGGTGCTGAGTTCTGCGGTCTTGTTTATCAGGGGTCTGCACTTCAGGCAGCTCTCTGGAGTCTCGCAGGTACTCAACAGACTGGTAGTTGACTCTACTCAGGTTGGAATATGTCTGATTTATATATTCAGTGGTTTCTGTGAGAGACAACCTATGTGGTCAGGTTGGAATATGTCTTATTTATATAATCAATGGTTTCAGTGAGAAAGAGGTTTTCCAAATAATGACATTTTTAATAATTTTAATAATTTTTTTCTCATGAAG
Seq C2 exon
CATTGCTGGAGCCCCAGAGGATGAAAAATCGCAGAGCACAGTCACTCAGGCACCAGAGTGCTTCGATCCTGCAGGGCCAGCTGGTTTCGTGAGGCCGACCTCTGGCTTTTCCCAGGGCCCAGGAAAGGAAACCTTGGAAAGTGCTCTCATTGCTCTGGACTCTGAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007242:ENSRNOT00000066777:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.447 A=NA C2=0.754
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAATGTCAGCCTGAGAGCAG
R:
CAAGGTTTCCTTTCCTGGGCC
Band lengths:
352-1571
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]