BtaINT0054893 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012148 | EHMT1
Description
Bos taurus euchromatic histone-lysine N-methyltransferase 1 (EHMT1), mRNA. [Source:RefSeq mRNA;Acc:NM_001099041]
Coordinates
chr11:105458562-105459990:-
Coord C1 exon
chr11:105459764-105459990
Coord A exon
chr11:105458736-105459763
Coord C2 exon
chr11:105458562-105458735
Length
1028 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGT
5' ss Score
9.8
3' ss Seq
TTATTTCCTCCTCCCCGAAGCGC
3' ss Score
8.28
Exon sequences
Seq C1 exon
GGTAATTTTATGGAATGTCAGCCTGAGAGCAGCATTTCTCATCGTTTCCACAAAGCCTGTGCCTCTCGAGTCAATAATGCCAGCTACTGTCCCCACTGTGGGGAGGAGACCTCCAAGGCCAAAGAGGTGACCATTGCAAAGGCAGACACGACGTCCACGGTGACCCTGGCCCCTGGGCAGGAGAAGAGCTGTGCAGCAGAGGGCAGGGCCGACACCACCACGGGCAG
Seq A exon
GTATGTGCCCCCAGCCGCCAGGGGGTCTCCCTGCTGGCGCACGCGCCGTGAGCTCTGACCCGTGAGGCTGGGAGGCACGGTGACTTGTGTTTGCTCGCTGCGCTGTGCACGTGTCTCCTCTGCACACTCATTCACCTGTGTGTGGACCTGTGTCACACCGTCCTCCGTGATGTGTGTCCGTGCTCTGTGTTGAAGCACAGTGCTCCCTGAGCCTGCGGTGCCTGTGCGTGCCTGTCCCTGCCTGCGTGCACCTGTGTGTACGTGTACGACGTGGAGCGTCAGCATCAGCTGCTGTATGGTCTGCTGTTACTGTGCTATGTTTAGGACGCCCTAGCTGAACACACAAGAAACAGTCTACAAGAGAAGGATTTGTATTGCAAACATATAGTTTTCTTCCTAAAAGAATTAGGTGGAAATAGCTGAAGAACTCGTAGAGCTAATTGGAGTTAGTCGTCCAGATGATCAGTTAAGAAAAGGTGTCAGAAGCCTTGTCCTCACCAGCCTGTCCAGCTGGAAGCCAGGGTGAAGGAGAGCCTTCAAAACAGCAGCAAACTCACGACCTACCCTAACCCGTGACTGAAAATCCGCTGAAGGTTAAGAGGCTCAAATTGTAAACATTCAGAACTTAGTATGGGGATGGTGTTGATGCCATCATATTTTTGTGAATTAATTATGTTAGTCTATAAGTTTAATGCTCTTTGAGTCAAAATTCCAAGGTGTTCCTTGTATTGGTCAGGCAGTGGACTTGAGATTCAACCTGGAGTGGATTCTAAAGCAAATTTGAACACTGGTCCAGAAGCCTAGGAAAGGCTGCCCTCACTTCTGAGTGCTCCCTGGGACTTGGTCTGCGTCTGGGCACTGCCCTCTGGGCCGGGACAGACAGTGAGCCCGAGGTCGTTTTCCGTCTCGGAGGAGCAGCACAGCTGGGGGCTGGGGGATCCTGTTTTGTGTATTCATTGGTTTCCGTAAGAGGGGGAGTTTGCATGTCTCTAAAACTCAGAATTCCACTTATTTCCTCCTCCCCGAAG
Seq C2 exon
CGCTGCTGGCCCCCTGCTCTCAGAGGAGGACAAGCCGCAGAGCCTGGCCCCCCAGGTGCCGGAGGGCTTCGACCCCACAGGGCCGGCTGGGCTGGGGAAGCCGGCGCCAGGCCTCTCCCAGGGCCCTGGGAAGGAGACCCTGGAGAGCGCACTCATCGCCCTGGATTCCGAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012148:ENSBTAT00000016118:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.421 A=NA C2=0.932
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCAGCCTGAGAGCAGCATTT
R:
CTCCAGGGTCTCCTTCCCAG
Band lengths:
356-1384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development