GgaINT1012134 @ galGal4
Intron Retention
Gene
ENSGALG00000008472 | EHMT1
Description
histone-lysine N-methyltransferase, H3 lysine-9 specific 5 [Source:RefSeq peptide;Acc:NP_001012550]
Coordinates
chr17:2055975-2057332:+
Coord C1 exon
chr17:2055975-2056201
Coord A exon
chr17:2056202-2057167
Coord C2 exon
chr17:2057168-2057332
Length
966 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
TGGTTCTATCTCCTTTTCAGTGT
3' ss Score
9.38
Exon sequences
Seq C1 exon
GGCACTTTCATGGAGTGTCAGCCTGAGAGCAGCATCTCCCACCGTTTCCACAAGAGCTGTGCCTCCCAGGTCAACGACACGAGCTACTGCCCACACTGCGGGGAAGATGCCTCCAAGGCAAAGGAGGTGACAATAGCAAAAGCAGACACGACTTCGACAGTGTCGCTGACCTACGAGCAGCAGAAACCAGCAGCAGTGGAGGGAAGGGCTGACACCACGACAGGGAG
Seq A exon
GTGAGCTTGGGAGCGCATGGCAGCCTCAACCCTTGTGCCAGACCGTGCTTTGCATTTGAATGCTTGCACTCCTCCTGGCAAAGCAAGGTGTTTTCTGATCCTGCTCTGACAAGCCAAGCTCAGCTGCAGGTGTTTGCAGGCTTATTCTGTGCTACGGTGCCAGAGGAGCTCAGCAAACACAGGATGAGCTGGGGCAACAACTATGAAGATTAGAAGGATTTGGGGGTTAATACAACTCCTTCCTTTTATTGTTAGGAATGAAACTGAGGCAGGGGAGATTTAGGTTAGATATTAGGAGGAAGTTTTTCACCCAGAGGGTGGTGACGCACTGAACAGGTTGCCCAAGGAGGTGTGGATGCCCCATCCCTGCAGGCATTCAAGGCCAGGCTGGATGTGGCTCTGGGCAGCCTGGGCTGCTGGTTGGCGACCCTGCACATAGTAGGGGGTTGGAACTGGATGAGCATTGTGGTCCTTTTCAACCCAGGCCATTCTATGAAATTCCGTGAAATAATAGAGGAATGAGTTGACATCTCCATGTGTGGTGAATGAAAGGGAAATTCATGTGGTATACCTAGCCTGAGCTGCCTAGCTGCCCACAGCAGTGGGCACAGATGCAGAGAATCGAAACTTAGAAGAAAACGTAAATGAAGACATCCCTGTGATGAACAGTGCTTCAGCTTCCTGTGTGATCTGATCTTGTTCTCGAGGCTTTTATGACTTGCAGTGAACAGGGCAGTGCCCTCAGCCCCATGTTCTTCTATTTCCTGTTGGAAAGAGTACATAAAAATGTAGTCATAGGACAATGCAACTCCTTACCAAAAAGGCTGTAAAATATCTTGCTTTGTGTTTCAATTTTGCTTACGCTGTCTGTCAATTTAAAATCAATTTCCTTTCCTTCTTTGGCGTAAGATACACACAGTGTTGTATATTTTTAATGGTTGTGCTTTGGTTCTATCTCCTTTTCAG
Seq C2 exon
TGTCACTGGAACGCGGTTGTCTGAAGAAGACAAGCCAGAAAGTTCAGCTGCAGAGGGATTTGACTTAGCTGGATCTTCAGTTTTTCCAAAGCCTACTACTAGCCTGACCCAGGGACCAGTTAAAGAAACTCTGGAAAGTGCCCTGATTGCCCTGGACTCTGAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008472:ENSGALT00000013807:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.532 A=NA C2=0.725
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCCACCGTTTCCACAAGAG
R:
GCAATCAGGGCACTTTCCAGA
Band lengths:
342-1308
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]