RnoINT0053570 @ rn6
Intron Retention
Gene
ENSRNOG00000030630 | Ehmt2
Description
euchromatic histone lysine methyltransferase 2 [Source:RGD Symbol;Acc:1302972]
Coordinates
chr20:4584884-4585377:+
Coord C1 exon
chr20:4584884-4585119
Coord A exon
chr20:4585120-4585194
Coord C2 exon
chr20:4585195-4585377
Length
75 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTG
5' ss Score
9.04
3' ss Seq
CTCAGACCCTTTTCCCACAGTGC
3' ss Score
7.18
Exon sequences
Seq C1 exon
GGCACCTTCCTGGAGTGTCACCCCGACTTCCGTGTAGCTCACCGCTTCCATAAGGCCTGCGTGTCCCAGCTCAATGGGATGGTTTTCTGTCCCCACTGTGGGGAGGACGCCTCAGAGGCCCAGGAGGTGACCATCCCTCGGGGCGATGGGGGAACACCCCCGGTTGGCACTGTGGCGCCTGCCCCGCCACCCCTGGCACACGACGCCCCAGGGCGAGCGGATACCTCCCAGCCCAG
Seq A exon
GTACTGGCCTCCCCGGCCCGCCCCTTCCCCATCTTAATTCCCTTGCCCCCCAGACCTCAGACCCTTTTCCCACAG
Seq C2 exon
TGCCCGAATGCGAGGACACGGAGAGCCAAGGCGCCCACCCTGTGATCCCCTGGCCGACACCATTGACAGCTCGGGGCCTTCTCTGACTCTGCCTAATGGCGGCTGCCTCTCAGCTGTGGGTCTGCCCCCAGGGCCAGGCCGGGAAGCCCTGGAAAAAGCCTTGGTCATCCAGGAGTCCGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030630:ENSRNOT00000047370:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.494 A=NA C2=0.839
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTTTCTGTCCCCACTGTGG
R:
CTCTCCGTGTCCTCGCATTC
Band lengths:
181-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]