BtaINT0024983 @ bosTau6
Intron Retention
Gene
ENSBTAG00000005676 | BAT8
Description
Bos taurus euchromatic histone-lysine N-methyltransferase 2 (EHMT2), mRNA. [Source:RefSeq mRNA;Acc:NM_001206263]
Coordinates
chr23:27286539-27286949:+
Coord C1 exon
chr23:27286539-27286693
Coord A exon
chr23:27286694-27286781
Coord C2 exon
chr23:27286782-27286949
Length
88 bp
Sequences
Splice sites
5' ss Seq
GCTGTGAGC
5' ss Score
3.2
3' ss Seq
GGGCTCCTGTCCCCTCCCAGGTT
3' ss Score
9.26
Exon sequences
Seq C1 exon
GAGGAGAACATCTGCCTGCACTGGGCCTCCTTCACCGGCAGCGCCGCCATCGCCGAGGTCCTCCTGAACGCCCGCTGCGACCTCCACGCTGTCAATTACCACGGGGACACACCCCTGCACATCGCGGCCCGGGAGAGCTACCACGACTGCGTGCT
Seq A exon
GTGAGCCCCCACCCGGCACCCAGCCCCACACGCGCCCCTCTGCCACCTCTCACGGCCAGGTGCCCCACGGGCTCCTGTCCCCTCCCAG
Seq C2 exon
GTTGTTCCTGTCACGCGGGGCGAACCCTGAGCTGCGGAACAAGGAGGGGGACACGGCGTGGGACCTGACCCCCGAGCGGTCCGACGTGTGGTTTGCCCTCCAGCTCAACCGCAAGCTCCGGCTCGGGGTGGGGAATCGGGCCATCCGCACGGAGAAGATCATCTGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005676:ENSBTAT00000007456:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.105
Domain overlap (PFAM):
C1:
PF127962=Ank_2=FE(75.0=100)
A:
NA
C2:
PF127962=Ank_2=PD(19.1=22.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCACGCTGTCAATTACCACG
R:
GTTGAGCTGGAGGGCAAACC
Band lengths:
182-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]