MmuINT0056002 @ mm10
Intron Retention
Gene
ENSMUSG00000013787 | Ehmt2
Description
euchromatic histone lysine N-methyltransferase 2 [Source:MGI Symbol;Acc:MGI:2148922]
Coordinates
chr17:34908404-34908805:+
Coord C1 exon
chr17:34908404-34908558
Coord A exon
chr17:34908559-34908637
Coord C2 exon
chr17:34908638-34908805
Length
79 bp
Sequences
Splice sites
5' ss Seq
TCTGTAAGC
5' ss Score
4.33
3' ss Seq
GGCCTTATGTTCCTCTTCAGGTT
3' ss Score
10.08
Exon sequences
Seq C1 exon
GAGGAAAACATCTGCCTGCACTGGGCCTCCTTCACGGGTAGTGCCGCCATCGCTGAGGTCCTTCTGAATGCCCAGTGTGATCTCCATGCTGTCAACTACCATGGGGACACGCCCCTGCACATAGCCGCCAGGGAGAGCTACCATGACTGTGTTCT
Seq A exon
GTAAGCCCTAGCTTCCCCAACCCCTGGCACCCACACCCCACTGTCCAATCTCTGACCTAGGCCTTATGTTCCTCTTCAG
Seq C2 exon
GTTGTTCCTGTCTCGTGGAGCCAACCCTGAGCTTCGGAACAAAGAAGGAGACACGGCATGGGATCTGACCCCAGAGCGCTCTGATGTGTGGTTTGCACTGCAGCTCAATCGAAAGCTTAGGCTTGGGGTAGGGAACCGGGCTGTCCGCACCGAGAAGATCATCTGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000013787:ENSMUST00000013931:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.051 A=NA C2=0.106
Domain overlap (PFAM):
C1:
PF0002325=Ank=PD(5.9=3.8),PF127962=Ank_2=PU(56.1=86.8)
A:
NA
C2:
PF127962=Ank_2=PD(18.3=22.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGTCAACTACCATGGGGA
R:
CGATTGAGCTGCAGTGCAAAC
Band lengths:
180-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types