DreINT0009791 @ danRer10
Intron Retention
Gene
ENSDARG00000102325 | EHMT2
Description
euchromatic histone-lysine N-methyltransferase 2 [Source:HGNC Symbol;Acc:HGNC:14129]
Coordinates
chr19:1340275-1341363:-
Coord C1 exon
chr19:1341209-1341363
Coord A exon
chr19:1340443-1341208
Coord C2 exon
chr19:1340275-1340442
Length
766 bp
Sequences
Splice sites
5' ss Seq
CACGTGGGT
5' ss Score
4.46
3' ss Seq
TTTGTCTTTAATTTTTCCAGGTT
3' ss Score
9.79
Exon sequences
Seq C1 exon
GAGATGAACGTGTGTCTGCACTGGGCTTCATTCGCAGGCAGTGCTGAGATAGCAGAGCTGGTCCTGAACGCCGGCTGTCCTCTTTCCTCCGTCAACGTTCACGGAGACACACCGCTGCACATCTCCGCTCGCGAGGGATACAGCGACTGCGTCAC
Seq A exon
GTGGGTCACACACACACACACACCAACATTTAGCACTAATCAGTGTGCGAATTAACCGCTAACGATTCCAACATAGGTTTTAAACATTACCCTAACCCTAGCCGTAACCTAGTACTGGGGAAACACCCATACACACTCAATCAAACACACACTACAGTCAGTGTAGTTGATCAGTTCTCCTATAGCGCATGTGTTTGGACTGTGGGGGAAACCAGAGCACTTGGAGGAAACCCACGCCAACACAGGGAGAACATGCAAACTCCACACAGAAACACCACTGAGCCACTGTGCTGGCCTTTTTATTTTAATTAGTAAATGTTTTGTTTAAAATACAGATCAGAGCAAATTATTTCTCAGTATTAAAGGGCTGAAACCCCACGCGGCTTGTTTTGGCATCCTTCAAGTGTTATTAGGGGTGGTCCATCCCCCCCAAACCCCCCTTTTTTGCACCCTGACCCTAATGACAAGCATCATTGTTAGATTTTGCTGTATTTGGCTGAACCGTTGGGTGGCTTGCCAATATATTAGATGACTCTAATGCATAAAATGCTTGGCAACTGAATTATTGAGCTTAATGATTAACCCTTGTGTACTGTTCAGGTTGACTCCTCTTTGGGGATGTCGGTGCTGTTTTTGCCCCATTGACTTCCATTATAATCACATATTTAGATTGCAAAGCCGTGACCGCATATAATCCTGCATTCTTTATTGTTGCTGGTTTTCCCTGTTGGGATTAAGAGTTATAATTTGTCTTTAATTTTTCCAG
Seq C2 exon
GTTGTTTCTGTCTCGCGGTGCAGACATCGATATCGTGAATAAAGAGGGCGACACGCCGCTGTCTCTGGCCCGCGGGGAGACGCCCGTCTGGGTGGCGCTGCAGATCAACAGAAAACTACGAAGAGGAATCGCAAACCGCATCGTGCGCACCGAGAGGATCATCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000102325:ENSDART00000168138:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PU(55.4=88.5)
A:
NA
C2:
PF127962=Ank_2=PD(43.4=63.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAACGTGTGTCTGCACTGG
R:
CTGCAGATGATCCTCTCGGTG
Band lengths:
320-1086
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]