RnoINT0053577 @ rn6
Intron Retention
Gene
ENSRNOG00000030630 | Ehmt2
Description
euchromatic histone lysine methyltransferase 2 [Source:RGD Symbol;Acc:1302972]
Coordinates
chr20:4586893-4587311:+
Coord C1 exon
chr20:4586893-4587047
Coord A exon
chr20:4587048-4587143
Coord C2 exon
chr20:4587144-4587311
Length
96 bp
Sequences
Splice sites
5' ss Seq
TCTGTAAGC
5' ss Score
4.33
3' ss Seq
AGGTTTTCTATCCCTCTCAGGTT
3' ss Score
8.41
Exon sequences
Seq C1 exon
GAGGAAAACATCTGCCTGCACTGGGCTTCCTTCACGGGTAGTGCCGCTATTGCCGAGGTCCTCCTGAATGCCCAGTGCGACCTCCATGCTGTCAACTACCACGGGGACACGCCCCTGCACATAGCCGCCAGGGAGAGCTACCATGACTGCGTTCT
Seq A exon
GTAAGCCCCAGCTTCCGGACCCACCTCCCCACACCCCACTCCCGGCACCCACACCCCACTGTCCAGTCTCTGACTCAGGTTTTCTATCCCTCTCAG
Seq C2 exon
GTTGTTCCTGTCCCGTGGAGCCAACCCTGAGCTTCGGAACAAAGAAGGGGACACGGCGTGGGATCTGACCCCAGAGCGCTCCGATGTGTGGTTTGCACTGCAGCTCAATCGCAAGCTTAGGCTCGGGGTAGGGAACCGGGCTGTCCGCACCGAGAAGATCATCTGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030630:ENSRNOT00000047370:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.105
Domain overlap (PFAM):
C1:
PF127962=Ank_2=FE(71.8=100)
A:
NA
C2:
PF127962=Ank_2=PD(18.3=22.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGCTGTCAACTACCACGGG
R:
CGATTGAGCTGCAGTGCAAAC
Band lengths:
182-278
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]