HsaINT1012310 @ hg38
Intron Retention
Gene
ENSG00000204371 | EHMT2
Description
euchromatic histone lysine methyltransferase 2 [Source:HGNC Symbol;Acc:HGNC:14129]
Coordinates
chr6:31884392-31884799:-
Coord C1 exon
chr6:31884645-31884799
Coord A exon
chr6:31884560-31884644
Coord C2 exon
chr6:31884392-31884559
Length
85 bp
Sequences
Splice sites
5' ss Seq
GCTGTGAGC
5' ss Score
3.2
3' ss Seq
GCATCCTGTCCCCTCTTCAGGTT
3' ss Score
10.09
Exon sequences
Seq C1 exon
GAGGAGAACATCTGCCTGCACTGGGCCTCCTTCACGGGCAGCGCCGCCATCGCCGAAGTCCTTCTGAATGCGCGCTGTGACCTCCATGCTGTCAACTACCATGGGGACACCCCCCTGCACATCGCAGCTCGGGAGAGCTACCATGACTGCGTGCT
Seq A exon
GTGAGCCCCTGCCCCGCCCTTGATGCCCCTGCCCCCACTTCTTGCAGCCTCAGACCCTGCATTGGGCATCCTGTCCCCTCTTCAG
Seq C2 exon
GTTATTCCTGTCACGTGGGGCCAACCCTGAGCTGCGGAACAAAGAGGGGGACACAGCATGGGACCTGACTCCCGAGCGCTCCGACGTGTGGTTTGCGCTTCAACTCAACCGCAAGCTCCGACTTGGGGTGGGAAATCGGGCCATCCGCACAGAGAAGATCATCTGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204371:ENST00000375537:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.106
Domain overlap (PFAM):
C1:
PF127962=Ank_2=FE(75.0=100)
A:
NA
C2:
PF127962=Ank_2=PD(19.1=22.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGTCAACTACCATGGGGA
R:
GGTTGAGTTGAAGCGCAAACC
Band lengths:
179-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains