BtaINT0025052 @ bosTau6
Intron Retention
Gene
ENSBTAG00000017840 | BAZ2A
Description
bromodomain adjacent to zinc finger domain, 2A [Source:HGNC Symbol;Acc:HGNC:962]
Coordinates
chr5:57149882-57151470:+
Coord C1 exon
chr5:57149882-57150092
Coord A exon
chr5:57150093-57151369
Coord C2 exon
chr5:57151370-57151470
Length
1277 bp
Sequences
Splice sites
5' ss Seq
AAGGTACCG
5' ss Score
9.67
3' ss Seq
TTTTCTTTTTGCTCTCACAGAAA
3' ss Score
10.99
Exon sequences
Seq C1 exon
GGCTTGCAGTGGGTACAGCTCTCAGCAGAGGAGATCCCATCCAGGATTCAGGCAATTACTGGGAAACGGGGCCGACCTCGAAACACTGAGAAGGCCAAGACCAAGGAAGTCCCCAAGGTGAAACGGGGCCGAGGTCGGCCACCCAAGGTCAAAATCACTGAGCTGTTGAATAAGACAGACACCCGCCTCCTAAAGAAACTGGAGGCCCAAG
Seq A exon
GTACCGTGATGTTTCTTAACTTGGGAATTCTTCTCAATCTCTGAGGTATCTGAAATGTTGATGAATTGGTTAATGCCTGGGTTTCCCAGGAGTGTGACTGACATCTGGATGGAATGAATCTGAATTACCTTCCCCTCTCTGGAAAGCAGCATCAGGGTCCTAGCACTTTTGTGGTGGTTTTTTTTTTTTTTTTTTAAAACAACCAGTTCCTTTCTTGAGTTTCTCTTTAGTGGAGTCTTGTGCGGGGAGGTGGGGGTGGTGTCCCAGGAATAATTATGAGAGGAGAAGGCTTTTCGTGTCCTTTCTTACCATCTTTTAGCTTCTTACTTATCTTACTGGTCTTGCTTGTCTTGTGTAAACATTCATTTGCCACCATCATAGAGGTTCAGAATTCATATCTGAATCCAAAAGATAATTGGTACTGCTTTAGTGGGATGGATAGGTAGGAAATGTCTATAATTTTTCAGTAAATATTGCACTTACCTTATATAGTATGAAGAATGTGAAAGAATTTGGAATCAAGTATCTCTTATTCAGAATTCCAGCTCTGCCAGATTCTGACTGTATGACCTGGAGCAAGTAAAGCCTCATAGTGGTTCATCTGCAGATAGTATCTAAACTTAGAGGGTTGCTGCACAGATGTAGTAGTGGTAGTATTTCTATGCCAGAATAGGATAGGTACTATCGTATCAAAAACATCAGTTCTAAAACACTGTTGTCTGCAGAATCACATCTCAATATAGTCTTCCAAAGGAGAAGAAATTCAGATATCTTAATGGAGCAAGACATAGGAGCTGAACATAGGCAATAACTGTGTCAGATTTGATAGGATTCTACTAAAGTGTCCATTATCTGGTCCCTTCCTTTCTGGCACATTTTTCCTTAATTGGTGCTTCCAACTCAAGACCACCTGCTTTCTCTGGCAGTTTTTCTGTTTCCTTGCTTAGTTCTAAAATCAGCCTGTCAGGCAGCCTGGGGGAGGGACAGTCTCTGAGGCTACTTTGCTGTTCTGGCCTCCAGGACCCTTTCTAAAGCCATCTAAATTCCAGAGGCTGGTGCTTCTGGGCACAAGATGCCATTTGTGTTACCTCCACAGGAGGTTCCTCTCGTACATTTTTTTCTCCCAGCGTTTTATGTATACTTTAAAAAAAAAAGACAGGCATCTAGTTTCTTCAGGGAGCTGTTTGGAGGCCAGCTTTGTGACCAGCGTGTGCTGGTCTGGATGCTGGAGATTGGTCTGCCTGCCTCACTCTTCATTTTTCTTTTTGCTCTCACAG
Seq C2 exon
AAACACTGAATGAGGAGGATAAAGCAAAGATGTGTAAAATCAAGAAGAAGATAAAGCAGAAGGTGCAGCGGGGAGAGTGTCAGACTACTAACCAAGGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017840:ENSBTAT00000038215:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.746 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0449910=SAPS=PU(9.8=31.0)
A:
NA
C2:
PF0449910=SAPS=FE(14.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGCAGTGGGTACAGCTCTC
R:
CTGCCCTTGGTTAGTAGTCTGAC
Band lengths:
310-1587
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]