HsaINT0016791 @ hg19
Intron Retention
Gene
ENSG00000076108 | BAZ2A
Description
bromodomain adjacent to zinc finger domain, 2A [Source:HGNC Symbol;Acc:962]
Coordinates
chr12:57000417-57003730:-
Coord C1 exon
chr12:57003520-57003730
Coord A exon
chr12:57000518-57003519
Coord C2 exon
chr12:57000417-57000517
Length
3002 bp
Sequences
Splice sites
5' ss Seq
AAGGTACAG
5' ss Score
8.04
3' ss Seq
TTTTCTTTCTGCTCTCACAGAAA
3' ss Score
10.61
Exon sequences
Seq C1 exon
GGCTTGCAGTGGGTGCAGCTCTCAGCAGAGGAGATCCCGTCGAGGATTCAGGCAATTACTGGCAAACGGGGTCGACCTCGAAACACTGAGAAGGCTAAGACTAAGGAAGTCCCCAAGGTGAAACGGGGTCGAGGTCGGCCACCTAAGGTCAAAATCACTGAGCTATTGAACAAGACAGACAACCGCCCCCTAAAGAAACTGGAGGCCCAAG
Seq A exon
GTACAGTGGTATTTCTTACTTTGGGATTCTGCTCCCTCCATGAGGTATCTAAAATGTTGATGAATTGCTAATACCTGGATTTCCCAGGAGTGTAACTAACATTATCTGGGAAGAATGAATCTGAATCAGCTTCTCCTTGGAATCCAGCATCCTAGTCCCAGCGCTTGGGAATACTACTTTTCCAGCCATGGTCTTTCTTGAGTTGCTGTTACCAGTGAAACCTTGGGCTGCCCCCAGGTGTGTTTAGCCCAGAGGAGAGGACTTTCTTGCCCTTTCTTTCCATCTTTTAGCTCCTTATCATATACTGGTTCAGTTGTACCCTTTTACCTTACCCATTTCTACTATCATGGAGGTTCAGAATTCACATCTGAATTCAAAAGATAATTGGGAGCCAGGCATGGTGGTGTGTGCTTAATAATCCCAGTTACCCAGGAGGCTGAGGCAGGCAGCAGAGGATCACTTGAGCCCAGGAGTTTGGAGGCTACAGTAAACTTCAGTTGTGTTATTGCATTCCAACCTGGGCAACAGAGCAAGGCCCTGTTTCTAAAAAAAATAATAGGCCGGGCACAGTGTCTCACACCTGTAATCCCAGCACTTCGGAAGGCCAAGGCGGGCGGATCGTGAGGTCAAGAGATTGAGACCATCCTGGCGAACATGGTAAAACCCCGTCTCTACTAAAAATACAAAACAAAAAATTAGCTGGGCGTGGTGGTGTGTGCCTGTAGTCCCACCTACTTGGGAGGCTGAGGCAGGAGAATAGCTTGAACCTGGGAGGTGGAGGTTTCAGTAAGCTGAGATTGCGCCACTGCACTCCAGCTTGGTGATAGAGCTAGACTCTGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAGCCAGGCACGGTGGCTCACGCCTGTAATCCCACCACTTTGGGAGACTGAGGAGGGCAGATCACCTGAGGTCGGGAGTTCAAGACCAGCCTGACCAACATGAAGAAACCCTGTCTCTACTATAAATACAAAATTAGCCAGGCATGGTGGCGCATGCCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCTTGAACCCAGGAGGCAGAGGTTGCAGTGAGCTGAGATCACACCATTGCACTCCAGCCTGGGCAACAAGAGTGAAACTCCATCTCAAAATAATAATAATAATATAATAATAATAATAGGCACTGTTTTAGTGGATGGACAGGTGAGAAATACCTACATTTTTCAGTAAATAGTGTGTTTACCCTGGTGTAGTGTGAAGAATGTGAAAAAACTTAGTCTTTTGATTTTCACTCAGACATCTAGCCGTGTCATGTTTCAACCAAATGACCTAGAACAAGTCTCATTTTGTTTTTTTTTTTTTGAGACAGAGTCTTACTCTGTCACCCAGGATGGAGTGCAGTGGCACGATCTTGGCTCACTACAAGCTCTGCCTCCTGGATTCACCCCATTCTCCTGCCTCGGCCTCCCGAGTAGCTGGGACTACAGGTGCACGCCACCACACCTGGCTAATTTTTTGTATTTTTAGTAGAGACGGGGTTTCACCATGTTAGCCAGGATGGTCTCGATCTCCTGACCTCGTGATCCGCCCACCTCGACCTCTCAAAGTGCTGGGATTACAGGTGTAGCCCCCACGCCTGGCCCTTTTTTTTTTTTTTTCCAGATGGAGTTTTGCTCTTGTTGCCCAGGCTGGAGTGCAATGGCGCGATCTTGGCTCACCGCAACCTCCCAGGTTTAAGCGATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCATATGCCACCACGCCCAGCTAATTTTGTATTTTTAGTAGAGATGGGGTTTCTCCATGTTGGTCAGGCTGGTCTCGAACTCCTGACCTCAGGTGATCCGCCTGCTTCAGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACTGCACCCAGCTAAGTCTCATATTTTAATCAAAGCCTTAGGTAGTTCATCTGCCCATAATATCTGTCTTAGAGGGTTGTCACGTAGACATGTGGTGGCGTTTCTATACCAGAAACAAAATAATAAATATTGTCATGTCAGGGCCAGGCACGGTGGCTCACGGCTGTAATCCCAGCTCTTTGAGAGGCTGAGACCAGCGGATCATGAGGTCAGGCAATCAAGACCGTCATGGCTAAAACGGTGAAACTCCGCTTGTACTAAAAATACTAAAAATTAACTGGGCGTGGTGGCACGCGCCTGTAGTCCCAGCTACTGGGGTGGCTGAGGCAGGAGAATCGCTTGAACCTGGGAGGTGGAGATTGCAGTGAGCCGAGATTGTGCCATTGCACTTCAGCCTGGGCGACAGAGTGAGACTCCGTGTCAAAAAATATATATATGTATATATAGTCATGTCAGAAACATCAATTATGAAATACTCTTGTTTGCAGAATTATACTTCCACAAGTCTTCCCGAAAGGAAGAAATTCAGAACTTTTAGTGAAGCAAGACATGGAGCTGAGCATGATCAATAACTATGTCAGTGATTCTTTTGAGGTGTCCACTGTGTGGGCCTTTTTTCTGGCACACCCTTGGTTAATCAGTGCTTCTAACTACTACCCTCTTTCCCTGGCAGTTTGGCTTGCTGTATCCTTTCTCTGCTTTCTGCTCTAAAATCAGTCCGTGGGTTTCTGCTCTTGTCAGGTATCCTGGGAGAGAGATTGGCTCCAAGGCTACTCTGCCATTGTGGCCTCTTTTCTATCAGCAGGACACCTTCTAAAGCAGTCTGATTGGAGCCAGGGGCTGGTGCTTCTGGGCAGGAGATGTCATTTGAGTTCTTTGTGCCACCCCCATAGCAGGTGCCTCTCCTACATTTTTTCCCCCAATGTTTTATTATGTATACTTAAAAAAAAAAAAAGCTACTCTAGATTCTTCAGGGAGCTGCTTGGGAGGCCAGCTTTGAGACGGGCATGTGTTGCCCTGGATGCTAGAGAACTGCCTTCCTGCCTCACTTGTTTCATTTTTCTTTCTGCTCTCACAG
Seq C2 exon
AAACATTGAATGAGGAGGATAAAGCAAAGATTGCTAAAAGCAAGAAGAAGATGAGGCAGAAGGTTCAACGGGGAGAGTGTCAGACTACTATCCAAGGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000076108-BAZ2A:NM_013449:10
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.806 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0449910=SAPS=PU(9.6=31.0)
A:
NA
C2:
PF0449910=SAPS=FE(14.5=100)
Main Inclusion Isoform:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)