BtaINT0025053 @ bosTau6
Intron Retention
Gene
ENSBTAG00000017840 | BAZ2A
Description
bromodomain adjacent to zinc finger domain, 2A [Source:HGNC Symbol;Acc:HGNC:962]
Coordinates
chr5:57151370-57151811:+
Coord C1 exon
chr5:57151370-57151470
Coord A exon
chr5:57151471-57151745
Coord C2 exon
chr5:57151746-57151811
Length
275 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
ACTTCCTTTATGGTTTACAGGCC
3' ss Score
7.93
Exon sequences
Seq C1 exon
AAACACTGAATGAGGAGGATAAAGCAAAGATGTGTAAAATCAAGAAGAAGATAAAGCAGAAGGTGCAGCGGGGAGAGTGTCAGACTACTAACCAAGGGCAG
Seq A exon
GTGAGGGACATCAGCAAGATTCCACAGCAGGTTCACTTCTCCTACAGCTGCTCTGTCTTCTTTTCTATCTCCCATGCCTGCCACCTGCCATTTAGAGAATTTGGCTTGTTCAAAAATAATGTGGACATCTCCAGGGTGAAAGAATTGATCCATTGCCAGCCTCTCATCCCATGTCTCAGCTCTTCTCCCCAGCATCCTTGTTTGTTTTTGAATCCTAGCCCAAGCAGTGATGCTTTCAGAGTTTGAGAAGAAATGACTTCCTTTATGGTTTACAG
Seq C2 exon
GCCAAAAACAAGAGGAAACAAGAGACCAAGAGCTTAAAGCAGAAGGAAGCCAAGAAGAAATCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017840:ENSBTAT00000038215:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0449910=SAPS=FE(14.7=100)
A:
NA
C2:
PF0449910=SAPS=FE(9.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACTGAATGAGGAGGATAAAGCA
R:
CTTGGATTTCTTCTTGGCTTCCT
Band lengths:
165-440
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]