HsaINT0016792 @ hg38
Intron Retention
Gene
ENSG00000076108 | BAZ2A
Description
bromodomain adjacent to zinc finger domain 2A [Source:HGNC Symbol;Acc:HGNC:962]
Coordinates
chr12:56606247-56606733:-
Coord C1 exon
chr12:56606633-56606733
Coord A exon
chr12:56606313-56606632
Coord C2 exon
chr12:56606247-56606312
Length
320 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
ACTTCCCTTATGGTTTACAGGCC
3' ss Score
7.17
Exon sequences
Seq C1 exon
AAACATTGAATGAGGAGGATAAAGCAAAGATTGCTAAAAGCAAGAAGAAGATGAGGCAGAAGGTTCAACGGGGAGAGTGTCAGACTACTATCCAAGGGCAG
Seq A exon
GTGAGGGACATCAGAGAGATGAAACAGTAGGTTAATTTTTCCTACAACTTACTTCATCTTTTATTTTCATTTCCCACATCCGTCACTCCCTGTGTAGCAGCATATCTTCATTACCCTGAAATTTCTTGCACTTGATTTAGAGAATTGGGTTTGTTCAAAAATAACGTGGGCATCTCTAGGGTGAGAGAATTAATCCATTGCCAACCCCTCATTCCATCTCTCACCTCTCCTCCCCAGCACCCTTGTCTGTTTTTGAATCCTAGCCCAAGCAGAGATGCTTTCAGAGTTTGAGGAGAAATGACTTCCCTTATGGTTTACAG
Seq C2 exon
GCCAGAAATAAGCGGAAACAAGAGACCAAGAGCTTAAAGCAGAAGGAAGCTAAGAAGAAATCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000076108:ENST00000551812:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development