MmuINT0024111 @ mm9
Intron Retention
Gene
ENSMUSG00000040054 | Baz2a
Description
bromodomain adjacent to zinc finger domain, 2A [Source:MGI Symbol;Acc:MGI:2151152]
Coordinates
chr10:127555611-127556076:+
Coord C1 exon
chr10:127555611-127555711
Coord A exon
chr10:127555712-127556010
Coord C2 exon
chr10:127556011-127556076
Length
299 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
ACTTCCCTTGTGGTTTACAGGCC
3' ss Score
9.18
Exon sequences
Seq C1 exon
AAATACTGAGTGAGGACGATAAAGCAAAGATGACTAAAAACAAAAAGAAGATGAGGCAGAAGGTCCAACGGGGAGAAAGTCAGACTCCTGTCCAAGGGCAG
Seq A exon
GTAAGGGACATCAGTGGGCTGACTTTTTTACAACCTGCTTCATGTTCCATTTCCCACATTTCCACTCTCAGTATAGCAGTACACATTCACTAGGTGGAATTCCTTAGGCTAGATTTAGAATGGTCTTGGTCAAGAGCAATATAGGCGCCTCTAGAGTGAGAGAATGGAGCCATTGCCAGGTCCTCATCGTCCCGTCTCACCTCTCCTCCCCAGCACCCTTTTCTGTTTTTGAATCCCAGCCCAAGCAGAGGTGCTTTCCAAGTCATTTGAGGAGAAATGACTTCCCTTGTGGTTTACAG
Seq C2 exon
GCCAGAAACAAGAGGAAGCAAGACACCAAGAGCTTGAAGCAGAAGGACACTAAGAAGAAATTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040054-Baz2a:NM_054078:12
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATACTGAGTGAGGACGATAAAGCA
R:
TCAATTTCTTCTTAGTGTCCTTCTGC
Band lengths:
164-463
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: