BtaINT0025066 @ bosTau6
Intron Retention
Gene
ENSBTAG00000017840 | BAZ2A
Description
bromodomain adjacent to zinc finger domain, 2A [Source:HGNC Symbol;Acc:HGNC:962]
Coordinates
chr5:57156932-57157560:+
Coord C1 exon
chr5:57156932-57157083
Coord A exon
chr5:57157084-57157270
Coord C2 exon
chr5:57157271-57157560
Length
187 bp
Sequences
Splice sites
5' ss Seq
CGGGTACCC
5' ss Score
4.19
3' ss Seq
TTTCTCTCTCCCACCTGCAGGGC
3' ss Score
12.97
Exon sequences
Seq C1 exon
ACCCCATCTTTGAGCCCAGTCAGCTACCTGCCTTTGAAGAAGGGATCGTGAGCTGGACCCCCAAAGAGAAGACATATGAGACAGACCTGGCTGTCCTTCAGTGGGTGGAGGAGCTGGAACAGCGGGTGATCCTGTCTGATCTGCAGATTCGG
Seq A exon
GTACCCTGGGCTGGCACTGGGTAGGGGGTTGTTGAGGAGAGGGTGTTAATCTCTAATACCCTGTTAGGAAAAACCTAGGGTTCCCATTTTGCAAAGTGACCTCCCATGACCCTAAATGGGTCATATCTTTTTCTGTGCTTAATGTCCTTCTTTTATAATGAGTTTTATTTCTCTCTCCCACCTGCAG
Seq C2 exon
GGCTGGACATGTCCCAGCCCAGACTCTACTCGTGAAGACTTGGCCTACTGTGAGCACCTAGCTGATTCCCAGGAGGATATCACCTGGCGGGGTCGAGGCAAGGAAGGTCTGGCACCCCAGCGTAAAACTACCAACCCCCTGGACCTGGCAGTGATGCGACTTGCTGCCCTGGAGCAGAATGTGGAGCGGCGGTACCTGCGGGAGCCCCTGTGGCCAGCTCATGAGGTTGTGCTGGAGAAGGCCCTGCTCAGCACGCCCAGTAGTGCCCCACAGTGTACGCCTACAGAGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017840:ENSBTAT00000038215:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.098 A=NA C2=0.134
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAAGGGATCGTGAGCTGGA
R:
GTAGTTTTACGCTGGGGTGCC
Band lengths:
247-434
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]