HsaINT0016805 @ hg19
Intron Retention
Gene
ENSG00000076108 | BAZ2A
Description
bromodomain adjacent to zinc finger domain, 2A [Source:HGNC Symbol;Acc:962]
Coordinates
chr12:56993985-56994616:-
Coord C1 exon
chr12:56994465-56994616
Coord A exon
chr12:56994275-56994464
Coord C2 exon
chr12:56993985-56994274
Length
190 bp
Sequences
Splice sites
5' ss Seq
CGGGTATGC
5' ss Score
7.73
3' ss Seq
TTCCTCTCTCTTAACTGAAGGGC
3' ss Score
6.43
Exon sequences
Seq C1 exon
ACCCCATCTTTGAGCCCAGGCAACTACCTGCCTTTCAAGAAGGGATTATGAGCTGGTCCCCCAAAGAGAAGACATACGAGACAGACCTAGCAGTGCTTCAATGGGTAGAGGAGCTGGAGCAGCGGGTTATCATGTCTGATCTGCAGATTCGG
Seq A exon
GTATGCTGGGATTGGCACTGTGTAGGAAGGTTGGGGAAAAGCATTAGTCCCTTATGCCCTGTTAGAAAAAACCCTGGGTCCCTACTTCACAGGTGACCTACCTTAAGTGGGTCTTGTTTTTGTTTTTTTTTTTCCTATGCCAAATTTTCCTCCTTTTACAGTGAGTTTTATTCCTCTCTCTTAACTGAAG
Seq C2 exon
GGCTGGACATGTCCTAGCCCAGACTCTACCCGTGAAGACTTGGCCTACTGTGAGCACCTCTCCGACTCCCAGGAGGATATCACCTGGCGAGGTCGGGGCAGGGAGGGACTGGCACCTCAGCGTAAAACTACCAACCCTTTGGACCTGGCTGTGATGCGGCTGGCTGCCCTGGAACAGAATGTAGAACGGCGGTACCTGCGGGAGCCCCTCTGGCCAACTCATGAGGTTGTGCTGGAGAAGGCCCTGCTTAGCACACCTAATGGTGCCCCTGAGGGCACCACTACAGAGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000076108-BAZ2A:NM_013449:23
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=NA C2=0.237
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTCCCCCAAAGAGAAGACA
R:
CATCACAGCCAGGTCCAAAGG
Band lengths:
255-445
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)