MmuINT0024124 @ mm9
Intron Retention
Gene
ENSMUSG00000040054 | Baz2a
Description
bromodomain adjacent to zinc finger domain, 2A [Source:MGI Symbol;Acc:MGI:2151152]
Coordinates
chr10:127561391-127562238:+
Coord C1 exon
chr10:127561391-127561542
Coord A exon
chr10:127561543-127561948
Coord C2 exon
chr10:127561949-127562238
Length
406 bp
Sequences
Splice sites
5' ss Seq
CGGGTACCT
5' ss Score
4.35
3' ss Seq
TTTCTCTTTCCCACTGGAAGGGC
3' ss Score
5.65
Exon sequences
Seq C1 exon
ATCCCATCTTTGAGCCTAATGAGCTCCCTGCCTTGGAAGAAGGCGTTATGAGCTGGTCCCCCAAAGAGAAGACGTACGAGACAGACCTAGCTGTGCTCCAGTGGGTGGAGGAGCTGGAGCAGCGGGTTGTCCTCTCCGATCTGCAGATTCGG
Seq A exon
GTACCTGGGGTTGGCATTGGGGAGGGAATTGCTTAGGGAGGGTTTTGGTTTTGGTTTGGTTTATTTTTATGTATTGGATGTTTTGCCTGCGTGTTGCCTGCATGTACATTTATATAGTATGTACTATAGTATATAGTATGCGGTGTCCTCAGAGGCTAGAAGTGTCAGATCCTCTCACATTGATCTTAGAGATGATTGTGAACCCCATGACGTGTGTTCTGGGAATTGAACCTAGGCCCCTGTCTCAGCCTTACAGGTGTTGGGATTGCAAACATGAGCCACTACACCTGGCTGGGGAGGGTGCCAGGACAAGCCTTGGTGTCTTCTTCCTGAGTGACCTGCCATGACATCATGACATGCAGTGTTTCCCTTTACAATGCGTTCTGTTTCTCTTTCCCACTGGAAG
Seq C2 exon
GGCTGGACATGCCCTACCCCAGACTCCACCAGAGAAGACTTGACCTACTGTGAGCATCTGCCTGACTCCCCGGAGGATATCCCTTGGAGGGGTCGGGGCAGGGAAGGAACAGTACCTCAGCGGCAGAACAACAACCCTCTGGACCTCGCTGTGATGCGATTGGCTGTTCTGGAGCAAAATGTGGAGCGGCGGTACTTGCGGGAGCCCCTCTGGGCAGCCCATGAGGTGGTAGTGGAGAAGGCCCTACTGAGCACACCCAATGGTGCCCCTGATGGCACCTCAACTGAGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040054-Baz2a:NM_054078:24
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.098 A=NA C2=0.351
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGGCGTTATGAGCTGGTCC
R:
GCCTTCTCCACTACCACCTCA
Band lengths:
356-762
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: