BtaINT0025103 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020654 | BAZ2B
Description
bromodomain adjacent to zinc finger domain, 2B [Source:HGNC Symbol;Acc:HGNC:963]
Coordinates
chr2:37126068-37126450:+
Coord C1 exon
chr2:37126068-37126235
Coord A exon
chr2:37126236-37126417
Coord C2 exon
chr2:37126418-37126450
Length
182 bp
Sequences
Splice sites
5' ss Seq
TAGGAGAGA
5' ss Score
-1.24
3' ss Seq
TGTATTGTTTTGTTTCTTAGAAA
3' ss Score
8.18
Exon sequences
Seq C1 exon
AAATGCAGTTTGGTTGGTGGAGAATTATTGACCCAGAGGACCTAAAAGCTTTGCTCAAAGTGCTCCATCTCAGAGGAATAAGAGAAAAGGCATTACAAAAGCAAATTCAGAAACACTTGGATTATATTACTCAAGCTTGCATTAAGAATAAGGATGGTATGTACTTAG
Seq A exon
GAGAGATTTCTGTTCTCTTGCTTAGTTATGATAATTAATCCTTTAATCTTAAAACATTTTGGTATATCATAATGCTTAATTTATTACTAGTAAGCATTTGCTCAACAAACAGTACCTCCTTAAATAGCTATTACTTTCTTATAATTTGTCACAACCTGTAGATGTATTGTTTTGTTTCTTAG
Seq C2 exon
AAAAGGATGTTCCTACTTTTAAGAGTAATATGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020654:ENSBTAT00000027534:35
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF156141=WHIM3=WD(100=70.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]