GgaINT0050425 @ galGal3
Intron Retention
Gene
ENSGALG00000012579 | BAZ2B
Description
NA
Coordinates
chr7:38197451-38198218:-
Coord C1 exon
chr7:38198063-38198218
Coord A exon
chr7:38197612-38198062
Coord C2 exon
chr7:38197451-38197611
Length
451 bp
Sequences
Splice sites
5' ss Seq
ATGGTAGGT
5' ss Score
8.6
3' ss Seq
AATATGATTCTCAAATGCAGTTG
3' ss Score
5.04
Exon sequences
Seq C1 exon
AAATGCAGTATGGGTGGTGGAGGATTACTGATCCTGAGGACCTAAAATCTTTGCATAAAGTGCTGCATCTCAGGGGAATAAGAGAAAAGGCCTTACAAAAACAAATACAGAAACACATGGACTATATCACTCTGGCCTGCATCAAAAATAAGGATG
Seq A exon
GTAGGTAGTTGGTATTCATGTTACACATGATACTGGAGCATAATAATGCTGACTGAGATCTCTCCAGGATGTGCTTGGATACAGAGATGGTCATAGTAGCCAAAAAAAAAAAAAAAAAAGTAAAAGGTCACATAGTTGCCTTTTTACCAGCCTTATTCTGGGAAGTTAGTGTTGGAAAAACCTTCTTTAATATAAATTCTCTATTGGTTTAAGTGATGATAACTTTTCAAGCATTTTCTGTCTCTGTAACAATATAGCTCAGCCTTCCCTTCCCCTTGCCTTTGAATTGCAAACTTGAAATCCTACAGAATTTGGTGGTCATATTGGATATCTTAAGAGCCATGCACTTCTGTAACAATTCTTCAGCATTTAATTGGACTAACAGGTAAAACAGTTTGAATTTACTTGGAGAAGTTATAATAATTTAACAAAATATGATTCTCAAATGCAG
Seq C2 exon
TTGCAATTATTGATATCAATGAAAATGAAGATAACCAGGTAACTCGAGATGTTGTGGAAAACTGGTCAGTAGAAGAGCAAGCAATGGAGGTGGACCTTGCTATTCTTCAGCAGGTGGAAGACCTAGAGAGGAGAGTTGCATCAGCTAGTTTGCAAGTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012579:ENSGALT00000037699:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.075 A=NA C2=0.148
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCAGTATGGGTGGTGGAGG
R:
ACTTGCAAACTAGCTGATGCA
Band lengths:
311-762
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]