RnoINT0024834 @ rn6
Intron Retention
Gene
ENSRNOG00000056984 | Baz2b
Description
bromodomain adjacent to zinc finger domain, 2B [Source:RGD Symbol;Acc:1309801]
Coordinates
chr3:45981558-45982410:-
Coord C1 exon
chr3:45982255-45982410
Coord A exon
chr3:45981719-45982254
Coord C2 exon
chr3:45981558-45981718
Length
536 bp
Sequences
Splice sites
5' ss Seq
ACGGTGTGT
5' ss Score
6.96
3' ss Seq
TGATTTCTTTTCAAATGTAGTTG
3' ss Score
6.19
Exon sequences
Seq C1 exon
AGATGCAGCTCGGCTGGTGGAGAATCATGGACCCCGAGGACCTGAGGACGTTGCTGAAGGTGCTGCACCTCCGAGGGCTACGGGAAAAGGCCCTGCAGAAGCAAGTGCAGAAGCACCTGGACTACATTACTCACGCCTGTGCCAAGAATAAGGACG
Seq A exon
GTGTGTGCCCGAGAGCGTCCTGCCGTCCTAATGCATTGTGAAACTCGTTGTTTTTACCCTCAAATGTTTTAATATGTCTTTACTTTTTTTTTTTTCAAATTATTTCTAATTCTTGGTAAGGATGTTTATGCATAGGCCAGAGGTATTGGATTGCCCTGAGCTCGAATTACGTACGGGTGGCACCTAATTTGTATGCTGAGAATCACAGTCAAGTCATGGATGAACAGTTCATTCTTTTTGGCACTGAGGAATCTCTCCTGTGCACACACACACACACATACTTAAATGCTGCTTAACAGTGGCTGATTGCTTTTCTCTTATTACTTATCACTTTTAGTGCCTGTCCACGTGCTATCTTGTGTCTTAGACGAGTCCTTACTCAGCGGTGAACCCCCTGCATGTGCACAAGTACATTTGTGTGTCTAAAAAAGTTGATATACATAGGGTCCCTAGCATTTCACTTATTTAGAGAAAGAAATCATTTTGTGGGTGGATTGGAAAAATAAATTTAATAACTGATTTCTTTTCAAATGTAG
Seq C2 exon
TTGCTATTATTGAATTAAATGAGAATGAAGAAAATCAGGTAACGCGCGATTTAGTGGAGAACTGGTCGGTAGAAGAGCAGGCGATGGAGCTGGACCTGAGCATTCTCCAGCAAGTGGAGGACCTGGAACGCAGGGTTGCATCCGCAAGCTTGCAAGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056984:ENSRNOT00000081302:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.185
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCGGCTGGTGGAGAATCATG
R:
CGTTCCAGGTCCTCCACTTG
Band lengths:
278-814
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]