DreINT0036881 @ danRer10
Intron Retention
Gene
ENSDARG00000057782 | baz2ba
Description
bromodomain adjacent to zinc finger domain, 2Ba [Source:ZFIN;Acc:ZDB-GENE-070615-37]
Coordinates
chr6:11753979-11755339:+
Coord C1 exon
chr6:11753979-11754134
Coord A exon
chr6:11754135-11755178
Coord C2 exon
chr6:11755179-11755339
Length
1044 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGC
5' ss Score
7.75
3' ss Seq
GTTTTTTTTTTTGTTTGCAGTGG
3' ss Score
9.04
Exon sequences
Seq C1 exon
ACATGCTGCTGGGCTGGTGGAAGGTGACAGACATGGAGGAGCTGAAAGCGCTAGTGAACTCTCTTCACAGCAGAGGTATCCGAGAGAGAGCCCTGCAGAAACAGCTGCAGAAGTCCATGGAGCTCATCGTACAGACCTGCAACAAGAACCGAGAGG
Seq A exon
GTGAGCACCATCACCTGTGTGTTTGATCCTAGAAAATGGAGTTAGCCATAGAAAACTGTCCAAGCTAAATAAAAAAAAAAGACTGGACTGTGGCAGAGATGCTCTTTATCATTTTGTTAATGAATTTGCTTCTGTTTTTTCTGTGTTTTTTTTCTTTTTTTTATATTTAGAAAGAACAACAGTCCATGTGAAAGAAGGTCTTATAAAATCTTTATTGTATTATTTTTATTTTATTTATTTTTTATTTAATTTTAATTTTATTATTTTGTTTATTTATTTATTTATTTTTTTTTGTTTAATTAATGAATTATTTAATTAATTTTATTTATTTATTTGTTGATTTTTTATTTTATTATTTATTTTATTTTATTATTTTATTGTTTTTTATTTTATTATTTATTTATTTTTTAGTATTGCAATAACTTAATGTATTAGAATAGGTCAATAATTAATAAAATATATATTTATTTTTTAAAAGAGAGCATTTCTTTTGTTTAGTCACAATTTATTTTTAATTTTATTTAGTTTTATTTAAAAGAGAAATTTTATTTTATTTAGCTTTATTATTATTATTTTTGTGTTCTATGTTATAATTATTTTATTTTAATATTGTTTTGTGTTTTATTTAATTAAGTTTTTTATTTAAAATTTTAATAATTTTTTATATCAAAGAAACTGAATGTATATACTGTATAATGTAAAACTTTAATATAAAACTGTAAAGCAAATTGATTTATTAATTTGGGACAACACTAAATACATATACTATGCTGTTGAGTGTGTAAGTGCATAGTGTGTCATTTGGGACACAGTGTAAATTTCTACTTTTTGAGGTTTGTTAATATAGAATGCAAAAATATAGAACAGCCAAAATGTATTATTTACTTGTTGGTAGCTTTAAATAACATTGAGGAGAAGCATGTAAAGCTCAGACTCAGCGAAGCGTGAGGCTGTCAGGCTGAGCTGAATTGTGCTGCGCTGTGCTCTACGGATGTGATTTCTCCTGGGCTCTCATGGCTGTCTTGTTTTTTTTTTTGTTTGCAG
Seq C2 exon
TGGCAGTTATGGAGGTCTCAGAGCTCGACGAGGGCCAGGTTTCCGTGGAGACGCTGCAGGAGTGGTGCGTGGAGGAACAGGCCATGGAGACTGACATTGCTCTGCTGCAGCAGGTGGAGGAGCTGGAGCGCAAAGTCACGTCTGCCAGCCTGCAGGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000057782:ENSDART00000151044:30
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.023 A=NA C2=0.139
Domain overlap (PFAM):
C1:
PF156141=WHIM3=WD(100=79.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGCTGCTGGGCTGGTG
R:
CTTGACCTGCAGGCTGGC
Band lengths:
316-1360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]