DreINT0001858 @ danRer10
Intron Retention
Gene
ENSDARG00000082979 | BAZ2B (2 of 2)
Description
bromodomain adjacent to zinc finger domain, 2B [Source:HGNC Symbol;Acc:HGNC:963]
Coordinates
chr9:52409470-52409911:+
Coord C1 exon
chr9:52409470-52409625
Coord A exon
chr9:52409626-52409750
Coord C2 exon
chr9:52409751-52409911
Length
125 bp
Sequences
Splice sites
5' ss Seq
ACGGTACCA
5' ss Score
5.45
3' ss Seq
ATTGAACTGGTTTTCTCCAGTGT
3' ss Score
4.67
Exon sequences
Seq C1 exon
AGATGTTGACCGGCTGGTGGAAAGTGTCCTCTGTGGAGGAGCTGCGGTCCATAGAAAAAGCCTGTCATCCCAGAGGGGTTCGAGAGAAGCAGCTGCAGAAACAGCTGCAGAAACACATGGACTATATAGCTCTGATCTGCAGCAGAAACAGAGACG
Seq A exon
GTACCATCACTGTTATACATGTTAACTGTCATGCACATTTTTGAGTAAAGGCCTGCAAAGGTAATGTCGAAATTCAATTTAATATAACTCTGAAATGCATTTGAAATTGAACTGGTTTTCTCCAG
Seq C2 exon
TGTCTGTGATGGAGGTCTCGCAGCTGAAGCACAATGGTCTCACTGAGGAGACAGTGCAACACTGGTGTGTGGAGGAGCAGGCCATGGAGGTGGACATCAGTGTCCTGCAGCAGGTGGAGGAGCTCCAGCACAGGGTCACCTCTGCCAGCCTGCAAGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000082979:ENSDART00000097149:36
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.151 A=NA C2=0.222
Domain overlap (PFAM):
C1:
PF156141=WHIM3=WD(100=73.6)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGGCTGGTGGAAAGTGTC
R:
CACTGATGTCCACCTCCATGG
Band lengths:
249-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]