BtaINT0025165 @ bosTau6
Intron Retention
Gene
ENSBTAG00000010736 | BBS5
Description
Bos taurus Bardet-Biedl syndrome 5 (BBS5), mRNA. [Source:RefSeq mRNA;Acc:NM_001101132]
Coordinates
chr2:26815719-26816009:-
Coord C1 exon
chr2:26815960-26816009
Coord A exon
chr2:26815847-26815959
Coord C2 exon
chr2:26815719-26815846
Length
113 bp
Sequences
Splice sites
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
3' ss Seq
CTTAAAATTTGTCCTTACAGAAA
3' ss Score
8.86
Exon sequences
Seq C1 exon
CTATTGGTTACAACTGCATATTGAATATTACAACAAGGACTGCTAATTCT
Seq A exon
GTAAGTCAGAAAAATCTTATTGAAATATATATAGTGAGGAAACAATAGATATCTGAGGTTGATGTTAGTTTTCACTGTAAATGAAAAATTGCTCTTAAAATTTGTCCTTACAG
Seq C2 exon
AAATTACGAGGCCAAACTGAAGCTCTTTATGTACTAACAAAATGTAACAGTACTCGTTTTGAGTTTATATTTACGAATTTGGTTCCTGGAAGTCCTAGACTTTATACTTCTCTGATTGCAGTACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010736:ENSBTAT00000014216:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF072896=DUF1448=FE(4.8=100)
A:
NA
C2:
PF072896=DUF1448=FE(12.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGAATATTACAACAAGGACTGCT
R:
CTGTGTACTGCAATCAGAGAAGT
Band lengths:
159-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]