GgaINT0050436 @ galGal3
Intron Retention
Description
NA
Coordinates
chr7:20141033-20141973:-
Coord C1 exon
chr7:20141924-20141973
Coord A exon
chr7:20141161-20141923
Coord C2 exon
chr7:20141033-20141160
Length
763 bp
Sequences
Splice sites
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
3' ss Seq
ATTTCAAATTTTCCTTACAGAAA
3' ss Score
9.71
Exon sequences
Seq C1 exon
CTGTTGGTTACAACTGCATTATAAATATAACTACAAGAACTGCCAACTCA
Seq A exon
GTAAGTTTCAAAAAATACTTTTTAAAATACTGAAAGAAGGTGTAATTTGTTATTTTTATTTATTGCAGTGTATGAATCTGAATGTTTACTTGCAGAAAAAGCAATAAAGGAATTTAGTTTGGGAGAGTTTGACATATTTATATAGAAGCATGATTCTAGTCAGTTCCCCAAAACAGTAAAACTCTTGTAATCACACTGTCTGGTGATTTTTCTCTGTTCTTGATAAGTGGAATGCCTGTTAGTTTGTTGTGTCTACAGCTAACAAAGATCTAGAAACAATAATTTTGTGCAAGAAAGCTCTCAAATGCATAGCCTGATTGCATGCAACTGTGAAGCCATTTGTTTGGCAAGCAGCAAAGAGGTAGCAGTGAGATTTTGTAGGTTCCTAAGCCAGCCACACGGTAGATGCCAGCTCACCAACTGGTCTGTGTATGGCATGGATGCTCAGCACGCTCATCACCCTTGGCTTGCACAACCTTCCCATTCCCCTGGCACAGCTACCAGAGCCAGGGTATTTTGGGAGCAAAAAGAAGGATGGTGACTCTGGATGATAAGAAGCAATTACTACAAATGTATAGCAGCCAGGCTTCGTTAGTTCTGCTGATGGAAACGCTAGCTCCCCGTGGAGGTGGGAAAAAGAAAGAAATGAAAGACAACAGTAAATTGCTAGACAACAGTAGGTCAGTGGTAGAATCAGGATTAAACCACTGGATGTGTGAGCTACAATACTGTCAAAATATTAAATTTCAAATTTTCCTTACAG
Seq C2 exon
AAATTACGGGGACAGACAGAAGCTCTGTATATATTGACTAAATGTAATAATACACGATTTGAGTTCATATTTACCAATGTTGTTCCTGGGAGTCCCAGACTCTTCACTTCAGTTATTGCTGTGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009846:ENSGALT00000016007:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF072896=DUF1448=FE(4.8=100)
A:
NA
C2:
PF072896=DUF1448=FE(12.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]