RnoINT0024917 @ rn6
Intron Retention
Gene
ENSRNOG00000007127 | Bbs5
Description
Bardet-Biedl syndrome 5 [Source:RGD Symbol;Acc:1310718]
Coordinates
chr3:55894566-55894870:+
Coord C1 exon
chr3:55894566-55894615
Coord A exon
chr3:55894616-55894742
Coord C2 exon
chr3:55894743-55894870
Length
127 bp
Sequences
Splice sites
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
3' ss Seq
TTGCAAAAACTACTTTACAGAAA
3' ss Score
3.07
Exon sequences
Seq C1 exon
CTATTGGCTACAACTGCATATTGAATATTACAACAAGAACTGCCAACTCT
Seq A exon
GTAAGTCTGAACCCTAGTGAAGTAGATGTGTCCTGAGGAAACATTGGATATTTAAAGTTAAGGCTTGCTTCCATCTCGAATGGGAACTTGCTCTTTAACTCTAAACTTTGCAAAAACTACTTTACAG
Seq C2 exon
AAACTCCGAGGCCAGACGGAAGCTCTTTATATATTAACAAAATGCAACACCACCCGGTTTGAGTTTATATTCACAAATCTGGTTCCCGGGAGCCCCAGACTTTTTACTTCTGTGATTGCAGTGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007127:ENSRNOT00000009396:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF072896=DUF1448=FE(4.8=100)
A:
NA
C2:
PF072896=DUF1448=FE(22.7=100),PF036948=Erg28=PU(16.4=27.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTATTGGCTACAACTGCATATTGA
R:
CTGTGCACTGCAATCACAGAA
Band lengths:
178-305
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]