RnoEX0014251 @ rn6
Exon Skipping
Gene
ENSRNOG00000007127 | Bbs5
Description
Bardet-Biedl syndrome 5 [Source:RGD Symbol;Acc:1310718]
Coordinates
chr3:55894566-55898385:+
Coord C1 exon
chr3:55894566-55894615
Coord A exon
chr3:55894743-55894870
Coord C2 exon
chr3:55898290-55898385
Length
128 bp
Sequences
Splice sites
3' ss Seq
TTGCAAAAACTACTTTACAGAAA
3' ss Score
3.07
5' ss Seq
CAGGTACAA
5' ss Score
7.09
Exon sequences
Seq C1 exon
CTATTGGCTACAACTGCATATTGAATATTACAACAAGAACTGCCAACTCT
Seq A exon
AAACTCCGAGGCCAGACGGAAGCTCTTTATATATTAACAAAATGCAACACCACCCGGTTTGAGTTTATATTCACAAATCTGGTTCCCGGGAGCCCCAGACTTTTTACTTCTGTGATTGCAGTGCACAG
Seq C2 exon
GGGAATTTAGGAACTTTTTTTATTACCAATGTGAGAATTGTGTGGCATGCAAATATGAATGACAGTTTTAATGTCAGCATACCATACCTGCAAATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007127_MULTIEX1-3/6=2-5
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF072896=DUF1448=FE(4.8=100)
A:
PF072896=DUF1448=FE(22.7=100),PF036948=Erg28=PU(16.4=27.9)
C2:
PF072896=DUF1448=FE(13.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTATTGGCTACAACTGCATATTGA
R:
GATTTGCAGGTATGGTATGCTGAC
Band lengths:
146-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]