DreEX0016688 @ danRer10
Exon Skipping
Gene
ENSDARG00000039827 | bbs5
Description
Bardet-Biedl syndrome 5 [Source:ZFIN;Acc:ZDB-GENE-040426-1083]
Coordinates
chr9:48592539-48595310:-
Coord C1 exon
chr9:48595261-48595310
Coord A exon
chr9:48594850-48594977
Coord C2 exon
chr9:48592539-48592674
Length
128 bp
Sequences
Splice sites
3' ss Seq
TCCCTCTTTTTTTCACCCAGAAA
3' ss Score
8.52
5' ss Seq
CAGGTAATT
5' ss Score
8.55
Exon sequences
Seq C1 exon
CTGTGGGATACAACTGCATTATTAATATCACCACAAGGACTGCAAATTCT
Seq A exon
AAACTAAGAGGTCAGACTGAAGCGCTTTACATATTAACTAAATCTAATAACACTAGATTTGAGTTCATCTTCACGAATGTGGTCCCAGGAAGTCCGAGACTGTTTACATCTGTCATTGCTGTTCACAG
Seq C2 exon
GGCTTATGAGACTTCTAAAATGTATCGGGATCTGAAGCTTAGAGGAGCTCTTATTCAGAATAAACAGCTGAGGCTTCTACCACAGGAGCAGGTTTATGACAAGATTAATGGAGTATGGAACCTGTCTAGTGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000039827_MULTIEX1-1/3=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF072896=DUF1448=FE(4.8=100)
A:
PF072896=DUF1448=FE(12.5=100)
C2:
PF072896=DUF1448=FE(13.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGGGATACAACTGCATTATTAA
R:
CTGATCACTAGACAGGTTCCATACT
Band lengths:
186-314
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]