DmeEX6018439 @ dm6

Exon Skipping

Gene

Description

The gene Bardet-Biedl syndrome 5 is referred to in FlyBase by the symbol DmelBBS5 (CG1126, FBgn0037280). It is a protein_coding_gene from Dmel. It has 2 annotated transcripts and 2 polypeptides (1 unique). Gene sequence location is 3R:4816318..4817776. Its molecular function is described by: phosphatidylinositol-3-phosphate binding. It is involved in the biological process described with: cilium assembly; intracellular transport. 2 alleles are reported. No phenotypic data is available. The phenotypic class of alleles includes: viable. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of low expression to a trough of extremely low expression. Peak expression observed within 06-18 hour embryonic stages.

Coordinates

chr3R:4816487-4817189:+

Coord C1 exon

chr3R:4816487-4816635

Coord A exon

chr3R:4816696-4816891

Coord C2 exon

chr3R:4816952-4817189

Length

196 bp

Sequences

Splice sites

3' ss Seq

AATTACATTTCCCTAAGAAGCCA

3' ss Score

0.23

5' ss Seq

TCAGTGAGG

5' ss Score

2.91

Exon sequences

Seq C1 exon

GCACAAGAACCTGCGGAGCGGAGAACGAGTGCTCGACTACATTTACCACATCGAAGACAGCAAAGGAAATCCGGGGGACACTGGTCGCCTGATGGTAACCAATTTGCGAATTATATGGCACTCGCTGGTCCACAAGAAGTACAATCTGT

Seq A exon

CCATTGGCTATGCTCGGATTGGCAACACCAACACTCGGGTAGTTCATATGCACTCCAAAGCAAGGATAGCCAGCCAGGCCCTCTACATCCTGGCGGTAAGCAACGAGACCCGCTTTGAGTTCCTTTTCACCGACGTATCTGGGGAAACGTCGCGTCGCGATCAGCCGATCTTCGCCAGCGTGTTCGACGTATATCA

Seq C2 exon

CCTTTATCAGCGTACTTATCTCTACCGCGACCTGAAGCTGCGCGGAGCCATCGTTCAAGCGGGTCAACTGGTTATCCTACCAGATGAGGAGGTCTTTAGCCATGTGCAGGGCGTGTGGAATTTGTCTAGCGACCAGGGCAACCTGGGCAGCTTCGTGGTAACCAATATTCGGCTGGTGTGGTTTGCAGATGCCAACGAGACCTTCAACATCAGTCTACCATATCTACAGATTGAGAGT

VastDB Features

Vast-tools module Information

Secondary ID

FBgn0037280-'1-2,'1-1,2-2=AN

Average complexity

A_S

Mappability confidence:

100%=100=100%

Protein Impact

ORF disruption upon sequence exclusion

No structure available

Features