GgaEX0014564 @ galGal4
Exon Skipping
Gene
ENSGALG00000009846 | BBS5
Description
Bardet-Biedl syndrome 5 protein [Source:RefSeq peptide;Acc:NP_001238960]
Coordinates
chr7:18176127-18178037:-
Coord C1 exon
chr7:18177988-18178037
Coord A exon
chr7:18177097-18177224
Coord C2 exon
chr7:18176127-18176262
Length
128 bp
Sequences
Splice sites
3' ss Seq
ATTTCAAATTTTCCTTACAGAAA
3' ss Score
9.71
5' ss Seq
CAGGTATCA
5' ss Score
7.33
Exon sequences
Seq C1 exon
CTGTTGGTTACAACTGCATTATAAATATAACTACAAGAACTGCCAACTCA
Seq A exon
AAATTACGGGGACAGACAGAAGCTCTGTATATATTGACTAAATGTAATAATACACGATTTGAGTTCATATTTACCAATGTTGTTCCTGGGAGTCCCAGACTCTTCACTTCAGTTATTGCTGTGCACAG
Seq C2 exon
AGCTTATGAAACTTCGAAAATGTATCGTGATCTGAAGCTGAGAAGTGCATTGATTCAGAACAAGCAACTGAGGCTGTTGCCACAAGAACAAATATATGATAAAATCAATGGAGTGTGGAATTTATCAAGTGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009846_MULTIEX2-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF072896=DUF1448=FE(4.8=100)
A:
PF072896=DUF1448=FE(12.5=100)
C2:
PF072896=DUF1448=FE(13.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ATATAACTACAAGAACTGCCAACTCA
R:
CTGGTCACTTGATAAATTCCACACT
Band lengths:
162-290
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]