GgaEX0014563 @ galGal4
Exon Skipping
Gene
ENSGALG00000009846 | BBS5
Description
Bardet-Biedl syndrome 5 protein [Source:RefSeq peptide;Acc:NP_001238960]
Coordinates
chr7:18176127-18179579:-
Coord C1 exon
chr7:18179514-18179579
Coord A exon
chr7:18177988-18178037
Coord C2 exon
chr7:18176127-18176262
Length
50 bp
Sequences
Splice sites
3' ss Seq
TTTTCTTCCTTCCCATGTAGCTG
3' ss Score
10.5
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
Exon sequences
Seq C1 exon
GTAGACTGCTTGTGACAAACTTAAGGATTATTTGGCGCTCATTGTCATTGCCCAGAGTTAATCTCT
Seq A exon
CTGTTGGTTACAACTGCATTATAAATATAACTACAAGAACTGCCAACTCA
Seq C2 exon
AGCTTATGAAACTTCGAAAATGTATCGTGATCTGAAGCTGAGAAGTGCATTGATTCAGAACAAGCAACTGAGGCTGTTGCCACAAGAACAAATATATGATAAAATCAATGGAGTGTGGAATTTATCAAGTGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009846_MULTIEX2-1/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF072896=DUF1448=FE(6.6=100)
A:
PF072896=DUF1448=FE(4.8=100)
C2:
PF072896=DUF1448=FE(13.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACTGCTTGTGACAAACTTAAGGA
R:
ACAGCCTCAGTTGCTTGTTCT
Band lengths:
141-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]