MmuEX0007741 @ mm9
Exon Skipping
Gene
ENSMUSG00000063145 | Bbs5
Description
Bardet-Biedl syndrome 5 (human) [Source:MGI Symbol;Acc:MGI:1919819]
Coordinates
chr2:69490839-69492430:+
Coord C1 exon
chr2:69490839-69490904
Coord A exon
chr2:69492120-69492169
Coord C2 exon
chr2:69492303-69492430
Length
50 bp
Sequences
Splice sites
3' ss Seq
TTCCTTTGTCTTTATTTTAGCTA
3' ss Score
9.16
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
Exon sequences
Seq C1 exon
GTAGACTCTTAGTCACAAACTTAAGGATCATCTGGCATTCCTTGGCATTGCCCAGAGTCAATCTTT
Seq A exon
CTATTGGTTACAACTGCATATTGAATATCACAACAAGAACTGCTAACTCT
Seq C2 exon
AAACTGCGAGGCCAAACCGAAGCTCTTTATATATTGACAAAATGCAACACTACCCGGTTTGAGTTTATATTCACAAACCTGGTTCCCGGGAGCCCCAGACTTTTTACTTCTGTGATCGCAGTGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000063145-'3-3,'3-2,5-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF072896=DUF1448=FE(10.8=100)
A:
PF072896=DUF1448=FE(19.3=100)
C2:
PF072896=DUF1448=FE(12.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCATTGCCCAGAGTCAATCT
R:
TGCACTGCGATCACAGAAGTA
Band lengths:
148-198
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: