GgaEX0014563 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr7:20141033-20143515:-
Coord C1 exon
chr7:20143450-20143515
Coord A exon
chr7:20141924-20141973
Coord C2 exon
chr7:20141033-20141160
Length
50 bp
Sequences
Splice sites
3' ss Seq
TTTTCTTCCTTCCCATGTAGCTG
3' ss Score
10.5
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
Exon sequences
Seq C1 exon
GTAGACTGCTTGTGACAAACTTAAGGATTATTTGGCGCTCATTGTCATTGCCCAGAGTTAATCTCT
Seq A exon
CTGTTGGTTACAACTGCATTATAAATATAACTACAAGAACTGCCAACTCA
Seq C2 exon
AAATTACGGGGACAGACAGAAGCTCTGTATATATTGACTAAATGTAATAATACACGATTTGAGTTCATATTTACCAATGTTGTTCCTGGGAGTCCCAGACTCTTCACTTCAGTTATTGCTGTGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009846-'7-6,'7-5,8-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF072896=DUF1448=FE(6.6=100)
A:
PF072896=DUF1448=FE(4.8=100)
C2:
PF072896=DUF1448=FE(12.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGGCGCTCATTGTCATTGC
R:
GGGACTCCCAGGAACAACATT
Band lengths:
132-182
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]