Special

RnoEX0014250 @ rn6

Exon Skipping

Gene
Description
Bardet-Biedl syndrome 5 [Source:RGD Symbol;Acc:1310718]
Coordinates
chr3:55892937-55898385:+
Coord C1 exon
chr3:55892937-55893002
Coord A exon
chr3:55894566-55894615
Coord C2 exon
chr3:55898290-55898385
Length
50 bp
Sequences
Splice sites
3' ss Seq
TTTGTGTGTTTGTATTTTAGCTA
3' ss Score
9.77
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
Exon sequences
Seq C1 exon
GCAGACTCTTAGTCACAAACTTAAGGATCATCTGGCATTCCTTGGCATTACCCAGAGTCAATCTTT
Seq A exon
CTATTGGCTACAACTGCATATTGAATATTACAACAAGAACTGCCAACTCT
Seq C2 exon
GGGAATTTAGGAACTTTTTTTATTACCAATGTGAGAATTGTGTGGCATGCAAATATGAATGACAGTTTTAATGTCAGCATACCATACCTGCAAATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007127_MULTIEX1-2/6=1-5
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact

ORF disruption upon sequence exclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):

C1:
PF072896=DUF1448=FE(11.9=100)
A:
PF072896=DUF1448=FE(4.8=100)
C2:
PF072896=DUF1448=FE(13.8=100)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Conservation
Chicken
(galGal4)
ALTERNATIVE
Chicken
(galGal3)
HIGH PSI
([1])
Zebrafish
(danRer10)
Zebrafish
(danRer10)
HIGH PSI
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGATCATCTGGCATTCCTTGG
R:
TGCAGGTATGGTATGCTGACA
Band lengths:
135-185
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]