Special

RnoEX0014249 @ rn6

Exon Skipping

Gene
Description
Bardet-Biedl syndrome 5 [Source:RGD Symbol;Acc:1310718]
Coordinates
chr3:55888291-55894615:+
Coord C1 exon
chr3:55888291-55888373
Coord A exon
chr3:55892937-55893002
Coord C2 exon
chr3:55894566-55894615
Length
66 bp
Sequences
Splice sites
3' ss Seq
TCTTGCTTCTTTGCTTTTAGGCA
3' ss Score
10.06
5' ss Seq
TTTGTAAGT
5' ss Score
7.4
Exon sequences
Seq C1 exon
ACAGATGAAAACAAGACCTGGGGAAGTCCTTATTGATTGTTTAGATTCTATTGAAGACACAAAAGGAAATAATGGAGACAGAG
Seq A exon
GCAGACTCTTAGTCACAAACTTAAGGATCATCTGGCATTCCTTGGCATTACCCAGAGTCAATCTTT
Seq C2 exon
CTATTGGCTACAACTGCATATTGAATATTACAACAAGAACTGCCAACTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007127_MULTIEX1-1/6=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact

Alternative protein isoforms (Ref)

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):

C1:
PF072896=DUF1448=FE(15.1=100)
A:
PF072896=DUF1448=FE(11.9=100)
C2:
PF072896=DUF1448=FE(4.8=100)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
HIGH PSI
Chicken
(galGal3)
HIGH PSI
([1])
Zebrafish
(danRer10)
HIGH PSI
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAAACAAGACCTGGGGAAGT
R:
AGAGTTGGCAGTTCTTGTTGT
Band lengths:
128-194
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]