DreEX0016692 @ danRer10
Exon Skipping
Gene
ENSDARG00000039827 | bbs5
Description
Bardet-Biedl syndrome 5 [Source:ZFIN;Acc:ZDB-GENE-040426-1083]
Coordinates
chr9:48595261-48597843:-
Coord C1 exon
chr9:48597761-48597843
Coord A exon
chr9:48596054-48596119
Coord C2 exon
chr9:48595261-48595310
Length
66 bp
Sequences
Splice sites
3' ss Seq
GTGTGTGTGTTTTTATAAAGGGA
3' ss Score
7.02
5' ss Seq
TGTGTGAGT
5' ss Score
5.84
Exon sequences
Seq C1 exon
GCAGATGAAGACCAGACCAGGTGAAGCACTCATCGACTGTCTGGATTCAATTGAGGACACAAAGGGAAATAACGGAGATAGAG
Seq A exon
GGAGACTTCTGGTGACCAATTTAAGGATAATCTGGCATTCGCTGGCGCTGCCAAGAGTCAACCTGT
Seq C2 exon
CTGTGGGATACAACTGCATTATTAATATCACCACAAGGACTGCAAATTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000039827_MULTIEX2-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF072896=DUF1448=FE(8.4=100)
A:
PF072896=DUF1448=FE(6.6=100)
C2:
PF072896=DUF1448=FE(4.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGACCAGACCAGGTGAAGC
R:
AGAATTTGCAGTCCTTGTGGTGA
Band lengths:
127-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]